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Baylor Residual breast cancer
13 Nov 2014 | | Contributor(s):: Creighton C, Lewis M, Chang J, Jonathan Bistline
Residual breast cancers after conventional therapy display mesenchymal as tumor-initiating features. There are four (4) files included in this study: Sample Annotation (combined_sample_annotation.txt) Gene expression data from CD44+/CD24- cells sorted by flow cytometry (GSE7513.gct) Human...
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cBioPortal
29 Jan 2016 | | Contributor(s):: Zhiping Gu
The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets, The current available studies: TCGA and ICGC projects, -cell line, prostate mskcc, esophageal OR stomach , Ovarian serous, and breast cancer. Available datatype: genetic...
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Instructional YouTube AltAnalyze Videos
13 Oct 2016 | | Contributor(s):: Nathan Salomonis
Interactive tutorial for processing raw bulk and single-cell RNA-Seq (FASTQ) data in AltAnalyze:https://www.youtube.com/watch?v=Jylu-V7FmpY Interactive tutorials for analyzing pre-processed bulk and single-cell RNA-Seq data in...
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Instructional YouTube AltAnalyze Videos
13 Oct 2016 | | Contributor(s):: Nathan Salomonis
Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm:https://www.youtube.com/watch?v=Jylu-V7FmpY Using AltAnalyze to process pre-computed bulk and single-cell gene expression...
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Integrative Cancer Biology Program Datasets
26 Apr 2016 | | Contributor(s):: Jonathan Bistline, Michael Reich
The NCI-ICBP promotes an integrative/systems approach to the study of cancer biology. The Program encourages scientists to study cancer as a complex biological system. Information gained from these studies are used to build reliable and testable predictive computation models of cancer processes...
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LBL ICBP50 integrative genomic data
13 Nov 2014 | | Contributor(s):: Joe Gray, Jonathan Bistline
From Joe Gray, Lawrence Berkeley National Laboratory. There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data (ICBP_U133a.zip) Affymetrix splice junction exon-exon data (ICBP_Junction.zip) Affymetrix...
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Mamomics
28 Jul 2014 | | Contributor(s):: Maggie Cam, Lalage Wakefield
Wafergen Target Data prototype resource
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Multiclass cancer diagnosis using tumor gene expression signatures
10 Nov 2014 |
Experiment Description: The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...
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OSU/IU ICBP50 integrative genomic data
13 Nov 2014 | | Contributor(s):: Yunlong Liu, Jonathan Bistline
Multi-domain assays of genome-wide DNA methylation and histone modification patterns in MCF7 and OHT drug resistant cells. Data are produced at LBNL and the OSU, provided from Indiana University School of Medicine (Yunlong Liu). There are eighteen (18) datasets in this study:...
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Tufts Gene Expression Data for Low Dose Radiation Experiments
13 Nov 2014 | | Contributor(s):: Lynn Hlatky, Edward Rietman, Jonathan Bistline
Expression signatures from low dose radiation exposure of various types of tissues. There are eight (8) files in this study: 1-7. Gene expression of cell lines exposed to low-dose radiation (5727049056.zip to 7196780010.zip) 8. Sample Annotation (ICBP_Data_Upload_Samples.xlsx)...