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LBL ICBP50 integrative genomic data

By Joe Gray1, Jonathan Bistline2

1. Lawrence Berkeley National Laboratory 2. Broad Institute



Published on


From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study:

  1. Affymetrix U133A gene expression data (icbp_u133a.gct)

  2. Affymetrix U133A gene expression data (

  3. Affymetrix splice junction exon-exon data (

  4. Affymetrix Human Exon 1.0 ST exon array data (

  5. Affymetrix SNP 6.0 data (

  6. MAGE-TAB Sample Annotation junction array scan (lbnl_breastcancercelllines_junctionarray_mage-tab.txt)

  7. MAGE-TAB Sample Annotation exon array scan (lbnl_breastcancercelllines_exonarray_mage-tab.txt)

  8. MAGE-TAB Sample Annotation SNP6 scan (lbnl_breastcancercelllines_snp6_mage-tab.txt)

  9. MAGE-TAB Sample Annotation U133 gene expression scan (lbnl_breastcancercelllines_u133a_mage-tab.txt)

  10. Combined Sample Annotation (icbp_snp6_sampleannotation.txt)
    Mapping between expression, junction, exon, and SNP scan names

  11. GISTIC Results (Amp_genes.txt)

  12. GISTIC Results (Del_genes.txt)

  13. GISTIC Results (alf.txt)

  14. GISTIC Results (all_lesions_file.txt)

  15. GISTIC Results (scores.gistic.txt)

  16. GISTIC Results (marker.txt)

  17. GISTIC Results (081708-all-samples-names-DNAcopy-output.txt)

These datasets have been exported from the Broad Institute's ICBP Data & Analysis Portal.

Cite this work

Researchers should cite this work as follows:

  • Joe Gray; Jonathan Bistline (2014), "LBL ICBP50 integrative genomic data,"

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