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Tags: gene expression

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  1. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Contributor(s):: Nathan Salomonis

    Interactive tutorial for processing raw bulk and single-cell RNA-Seq (FASTQ) data in AltAnalyze: Interactive tutorials for analyzing pre-processed bulk and single-cell RNA-Seq data in...

  2. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Contributor(s):: Nathan Salomonis

    Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm: Using AltAnalyze to process pre-computed bulk and single-cell gene expression...

  3. Integrative Cancer Biology Program Datasets

    26 Apr 2016 | | Contributor(s):: Jonathan Bistline, Michael Reich

    The NCI-ICBP promotes an integrative/systems approach to the study of cancer biology. The Program encourages scientists to study cancer as a complex biological system. Information gained from these studies are used to build reliable and testable predictive computation models of cancer processes...

  4. cBioPortal

    29 Jan 2016 | | Contributor(s):: Zhiping Gu

    The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets, The current available studies: TCGA and ICGC projects, -cell line, prostate mskcc, esophageal OR stomach , Ovarian serous, and breast cancer. Available datatype: genetic...

  5. Tufts Gene Expression Data for Low Dose Radiation Experiments

    13 Nov 2014 | | Contributor(s):: Lynn Hlatky, Edward Rietman, Jonathan Bistline

    Expression signatures from low dose radiation exposure of various types of tissues. There are eight (8) files in this study: 1-7. Gene expression of cell lines exposed to low-dose radiation ( to 8. Sample Annotation (ICBP_Data_Upload_Samples.xlsx)...

  6. OSU/IU ICBP50 integrative genomic data

    13 Nov 2014 | | Contributor(s):: Yunlong Liu, Jonathan Bistline

    Multi-domain assays of genome-wide DNA methylation and histone modification patterns in MCF7 and OHT drug resistant cells.  Data are produced at LBNL and the OSU, provided from Indiana University School of Medicine (Yunlong Liu).  There are eighteen (18) datasets in this study:...

  7. LBL ICBP50 integrative genomic data

    13 Nov 2014 | | Contributor(s):: Joe Gray, Jonathan Bistline

    From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data ( Affymetrix splice junction exon-exon data ( Affymetrix...

  8. Baylor Residual breast cancer

    13 Nov 2014 | | Contributor(s):: Creighton C, Lewis M, Chang J, Jonathan Bistline

    Residual breast cancers after conventional therapy display mesenchymal as tumor-initiating features.  There are four (4) files included in this study: Sample Annotation (combined_sample_annotation.txt) Gene expression data from CD44+/CD24- cells sorted by flow cytometry (GSE7513.gct) Human...

  9. Multiclass cancer diagnosis using tumor gene expression signatures

    10 Nov 2014 |

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

  10. Mamomics

    28 Jul 2014 | | Contributor(s):: Maggie Cam, Lalage Wakefield

    Wafergen Target Data prototype resource