From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study:

1. Affymetrix U133A gene expression data (icbp_u133a.gct)

2. Affymetrix U133A gene expression data (ICBP_U133a.zip)

3. Affymetrix splice junction exon-exon data (ICBP_Junction.zip)

4. Affymetrix Human Exon 1.0 ST exon array data (ICBP_Exon.zip)

5. Affymetrix SNP 6.0 data (ICBP_SNP6_GZ.zip)

6. MAGE-TAB Sample Annotation junction array scan (lbnl_breastcancercelllines_junctionarray_mage-tab.txt)

7. MAGE-TAB Sample Annotation exon array scan (lbnl_breastcancercelllines_exonarray_mage-tab.txt)

8. MAGE-TAB Sample Annotation SNP6 scan (lbnl_breastcancercelllines_snp6_mage-tab.txt)

9. MAGE-TAB Sample Annotation U133 gene expression scan (lbnl_breastcancercelllines_u133a_mage-tab.txt)

10. Combined Sample Annotation (icbp_snp6_sampleannotation.txt)
    Mapping between expression, junction, exon, and SNP scan names

11. GISTIC Results (Amp_genes.txt)

12. GISTIC Results (Del_genes.txt)

13. GISTIC Results (alf.txt)

14. GISTIC Results (all_lesions_file.txt)

15. GISTIC Results (scores.gistic.txt)

16. GISTIC Results (marker.txt)

17. GISTIC Results (081708-all-samples-names-DNAcopy-output.txt)

These datasets have been exported from the Broad Institute's ICBP Data & Analysis Portal.

Researchers should cite this work as follows:

• Joe Gray; Jonathan Bistline (2014), "LBL ICBP50 integrative genomic data," https://ncihub.cancer.gov/resources/628.

  BibTex | EndNote

1. breast cancer
2. copy number
3. exon arrays
4. gene expression
5. ICBP
6. snp