-
Standards Portal CRFs Common Data Fields
19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin
This DataView is for the Common Data Fields of the Standards Portal CRFsUse this DataView to browse, search, explore and download the essential set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were...
-
Standards Portal CRFs Complete View
19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin
This DataView resource page is for the Standards Portal CRFsUse this DataView to browse,search, explore and download the complete set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were assembled by...
-
Standards Portal Vocabulary DataView
15 Mar 2014 | Teaching Materials | Contributor(s): Sherri de Coronado, Denise Warzel, Ann Christine Catlin, Sumudinie fernando
The DataView for terminology referenced/used by the CDEs and CRFs currently contained in the Standards PortalThe DataView on this resource page can be used to browse, search, explore and download the NCI concepts for vocabulary referenced by the CDEs and CRFs uploaded to the Standards Portal....
-
Summarization of Big Data
07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes
All about assay selection...
-
Talking Science: Designing and Delivering Successful Oral Presentations
18 Sep 2014 | Downloads | Contributor(s): Shawn Mullen
-
TCGA Common Data Elements
15 Mar 2014 | Teaching Materials | Contributor(s): Ann Christine Catlin, Sumudinie fernando, Denise Warzel
TCGA Common Data ElementsTCGA version 2.6 CDEs are the standard elements that were used in validation of clinical data in the TCGA 2.6 data files. The data files are available for download at the Data Matrix. This resource page at the NCIP HUB presents the CDEs for easy search and discovery....
-
Text Messaging and Phone Calls as Tools to Promote Healthy Behaviors among Hispanic Populations
24 Nov 2015 | Teaching Materials | Contributor(s): Laura Leticia Nervi, Barbara Damron, Maria Otero, Andrew Sussman, Dolores Guest
Title: Text Messaging and Phone Calls as Tools to Promote Healthy Behaviors among Hispanic Populations Objectives: The primary aim of this project was to evaluate the use of text messaging and phone calls to motivate Hispanic adult males and females to increase their daily physical...
-
Text Messaging as a Method to Increase Oral Chemotherapy Adherence in Hispanic Cancer Populations
23 Nov 2015 | Teaching Materials | Contributor(s): Laura Leticia Nervi, Barbara Damron, Andrew Sussman, Dolores Guest
Title: Text Messaging as a Method to Increase Oral Chemotherapy Adherence in Hispanic Cancer Populations: Patient and Provider Feasibility Surveys Objectives: The purpose of this study was to explore the feasibility of conducting an interventional study to evaluate the effectiveness of text...
-
The Boston Medical Center Patient Navigation Toolkit
22 Dec 2015 | Downloads
The BMC Toolkit offers case studies, tools and resources from cancer care navigation that can be applied to reduce the impact of the target disease, health disparities, and barriers to care unique to your own community. For Program Planners, Volume 1: Developing your Patient Navigation...
-
The Cistrome Data Collection
22 Jan 2014 | Presentations
-
The Digital Slide Archive
13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper
Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.
-
Tips for creating Standards Group Pages
22 May 2014 | Teaching Materials | Contributor(s): Denise Warzel
The Standards Portal offers a way to organize dsicussions and resources related to a set of standards. The organizing construct can be either a community interested in sharing data or using common tools, or by a particular type of standard, for example demographics or biomarkers. An example of a...
-
Tools for Creation of Integrated Data Repository for Cancer Research
16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang
Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)
-
Tools to Analyze Morphology and Spatially Mapped Molecular Data
03 Oct 2014 | Presentations | Contributor(s): Joel Saltz
-
Trinity: RNA-Seq De novo Assembly Application
30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A
Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...
-
Understanding Colorectal Cancer to Protect our Communities
24 Nov 2015 | Teaching Materials | Contributor(s): NCI
This is a teaching material originally developed by NCI.
-
Why Use the Standards Portal at the Hub?
19 Mar 2014 | Teaching Materials | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin
The materials attached to this page were provided by Baris Suzek, who at the time was the Informatics Project Lead at the Innovation Center for Biomedical Informatics at Georgetown University School of Medicine. He conducted a study for the caBIG VCDE community to help clarify some of the...