NCIP Hub Dashboard Tutorial

15 Apr 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

This is a short "how-to" video to familiarize users with the customizable dashboard on NCIP Hub.

NCIP Hub QIN Workshop - March 3, 2015

19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

Performance Status Scoring : a standards portal resource

15 Mar 2014 | Teaching Materials | Contributor(s): Ann Christine Catlin, Sumudinie fernando, Denise Warzel, Angela Kummerow

The scoring scale used may depend on patient population, disease, study goals and other criteria. Many definitions of the scale scoring do not match the standard.What is Performance Status?Performance status attempts to quantify the general well-being of cancer and other patients. The score...

Resources on NCIP Hub

22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

Resources on NCIP Hub (2016)

02 Mar 2016 | Presentations | Contributor(s): Lisa Mahoney

This presentation is part of NCIP Hub's 2016 Webinar Series. It provides an overview of what resources are, when and why to use resources and how to upload resources to NCIP Hub.

Seven Bridges Cancer Genomics Cloud Pilot TCGA 2015 symposium workshop presentation

23 May 2015 | Presentations | Contributor(s): Deniz Kural

Basic and translational cancer research creates the need to disseminate, manage, and interpret large heterogeneous datasets. The volume and complexity of the data now routinely generated by high-throughput technologies has become too costly for individual laboratories and many research...

So What Can We Do With Nano Informatics? – Leveraging Decision Analytic Tools

22 Jan 2015 | Presentations | Contributor(s): Igor Linkov, Matthew Bates

Jan 22, 2015 meeting                  Nanotechnology Working Group Matthew E. Bates & Igor Linkov Risk & Decision Science Team Environmental Laboratory, Engineer Research and Development Center, US Army...

Some Thoughts on Reproducibility

05 Dec 2014 | Presentations | Contributor(s): John Rumble

Nano WG December 4, 2014

Standards Portal CDEs Complete View

15 Mar 2014 | Teaching Materials | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

This DataView on this resource page is used to explore the Standards Portal CDEsUse the DataView provided on this resource page to navigate, browse, search, explore and download the complete set of columns for NCI common data elements standards at the Hub. These CDEs are brought to the Hub for...

Standards Portal CRFs Common Data Fields

19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin

This DataView is for the Common Data Fields of the Standards Portal CRFsUse this DataView to browse, search, explore and download the essential set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were...

Standards Portal CRFs Complete View

19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin

This DataView resource page is for the Standards Portal CRFsUse this DataView to browse,search, explore and download the complete set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were assembled by...

Standards Portal Vocabulary DataView

15 Mar 2014 | Teaching Materials | Contributor(s): Sherri de Coronado, Denise Warzel, Ann Christine Catlin, Sumudinie fernando

The DataView for terminology referenced/used by the CDEs and CRFs currently contained in the Standards PortalThe DataView on this resource page can be used to browse, search, explore and download the NCI concepts for vocabulary referenced by the CDEs and CRFs uploaded to the Standards Portal....

Support Access to NPO's Structure and Content

13 Aug 2015 | Presentations | Contributor(s): Michael Halper, Vladimir Ventura, Yehoshua Perl

•Abstraction Networks (“AbNs”) for Ontologies•Two example AbNs:–Area taxonomy–Partial-area taxonomy•BLUOWL: taxonomy-based software tool•Application to the NPO•Conclusions

TCGA Common Data Elements

15 Mar 2014 | Teaching Materials | Contributor(s): Ann Christine Catlin, Sumudinie fernando, Denise Warzel

TCGA Common Data ElementsTCGA version 2.6 CDEs are the standard elements that were used in validation of clinical data in the TCGA 2.6 data files. The data files are available for download at the Data Matrix. This resource page at the NCIP HUB presents the CDEs for easy search and discovery....

Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers

17 Jun 2016 | Presentations | Contributor(s): Julio Facelli

Nano WG June 16, 2016 Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers by Julio Facelli

The impact of engineered nanomaterials on aquatic species: ISA-TAB compatible dataset mined from literature (2007-2016)

13 Jun 2017 | Presentations | Contributor(s): Anastasios Papadiamantis

Nano WG presentation, June 8, 2017Primary scope of the project was to: Model the toxicity of engineered nanomaterials (ENMs) at multiple levels and design and create a database (DB) containing extracted peer-reviewed published toxicity dataAnalyse the extracted data and identify...

The NANoREG Toolbox for the safety assessment of nanomaterials

16 Jan 2018 | Presentations | Contributor(s): Paula Jantunen

Presentation for the Nano WG on January 11, 2018 by Paula Jantunen,  The European Commission’s science and knowledge service Joint Research Centre NANOoREG Toolbox supports the framework by identifying & inventorying tools for the different steps and options of...

The Open Scholarship Initiative (OSI)

17 Dec 2015 | Presentations | Contributor(s): Glenn Hampson

Nano WG meeting November 19, 2015. : "What should the future of scholarly publishing look like? How about open access? Who should decide? Can journals become more affordable and accessible? Will journals continue to serve as the primary means of communicating research? Can institutional...

Tips for creating Standards Group Pages

22 May 2014 | Teaching Materials | Contributor(s): Denise Warzel

The Standards Portal offers a way to organize dsicussions and resources related to a set of standards. The organizing construct can be either a community interested in sharing data or using common tools, or by a particular type of standard, for example demographics or biomarkers. An example of a...

UCSC Biomedical Evidence Graph Demonstration

03 Jun 2015 | Presentations | Contributor(s): Josh Stuart, ellrott

The BMEG demonstration includes the following elements: 1) Organization of crowd-source challenges to develop best-of-breed methods including an overview of current DREAM projects, living benchmarks; 2) Enabling cloud-ready methods for mass compute with examples of recently...