The Bachelor (Collaborator) - A Statistician’s Tale Video
Short Videos to Promote Collaborative Opportunities in CIViC Video
A Statistical Framework to Systematically Characterize Cancer Driver Mutations in Noncoding Genomic Regions Video
Personal Ad for UCSC Xena Video
Bioinformatics Technology to Characterize Tumor Infiltrating Immune Repertoires Video
Open CRAVAT: Key Features and Opportunities for Collaboration Video
Integration of Next-Generation Clustered Heat Maps and the GenePattern Notebook Environment Video
Computational Plugins for Next-Generation Clustered Heat Maps Video
OncoMX: A Knowledgebase of Cancer Biomarkers that Enables Searches of Unified Cancer Mutation and Expression Video
Cloud Accelerated Cancer Genomics with AnVIL and Bioconductor: Introduction Video
Bioconductor Meets GA4GH: Cloud-Scale Cancer Genomics with Standardized Workflow Processing Video
Harvesting 29000 cancer-related non-TCGA transcriptomes using Bioconductor and HDF Cloud Video
GenePattern Notebook 2020 Update Video
cBio Portal Video
A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researcher Video
Globus Integration with MEV Video
Leveraging WebMvE Backend for Single Cell RNASeq Analysis Video
IGV Short Demonstration: Sharing Interactive Views with the IGV-Web Application Video
IGV Short Demonstration: Viewing evidence of alternative splicing in RNA-seq data with IGV's Sashimi Plot Video
Gene Set Enrichment Visualizations and Radial Plots Video
Gene Set Enrichment Analysis and Single Cell Data Video
TumorDecon Video
CNVpytor: A Python extension of CNVnator Video
Cistrome Explorer: Web-based Interactive Visualization Tool for Exploring Epigenomics Data with Associated Metadata Video
AMARETTO-Hub: A Knowledge Graph Platform Embedding AMARETTO Tools for Multimodal and Multiscale Network BioMedicine Video
Toolkit for Annotating Mutations in the 3D Cancer Genome Video
TCPA: An Integrated Bioinformatics Resource for Cancer Functional Proteomics Data Video
Analyzing Single Cell RNA-seq Data with the Single Cell Toolkit Video
The CoAssayExperiment for Managing Multi-Level -omics Data Video
Removing Batch Effects in Single Cell RNA-seq Data Using ComBat-Seq Video
Alignment Viewer 2.0 for Viewing Multiple Sequence Alignments Video
Method Comparison and Selection for microRNA-seq Depth Normalization: An Update Video
Trinity Transcriptome Assembly for Genetic and Functional Analysis of Cancer Video
Multi-modal cancer genome visualizations in JBrowse 2 Poster Demo
KiNet: A Novel Imaging Informatics Tool for Assessment of Ki67 Labeling Index Video
Image Based Dosimetry from 90Y PET Using GATE: A Comparison Between Total-Body PET EXPLORER and Conventional PET Imaging Video
XCIST: X-ray-based Cancer Imaging Simulation Toolkit Video
The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research Video
A Multi-resolution Model for Histopathology Image Classification and Localization Video
A Unified Machine Learning Package for Cancer Diagnosis Video
AI Assisted Pathology: A Tour of caMicroscope's Machine Learning Functionality Video
Tools to Analyze Morphology and Spatially Mapped Molecular Data: Quantitative Imaging for Pathology (QuIP) Software Platform Slides
STAN-CT: Standardize and Normalize CT Images Video
Federated Deep Learning Among Multiple Institutions for Automated Classification of Breast Density Video
The Federated Tumor Segmentation (FeTS) Platform: Intro Video
Cancer Imaging Phenomics Toolkit (CaPTk): Deep Learning Based Segmentation and Radiomic Feature Extraction Video
Cancer Imaging Phenomics Toolkit (CaPTk): Interactive Machine Learning Based Segmentation Video
Cancer Imaging Phenomics Toolkit (CaPTk): Radiogenomics in Brain Tumors Video
Cancer Imaging Phenomics Toolkit (CaPTk): Breast Parenchymal Pattern Characterization - LIBRA Video
Cancer Imaging Phenomics Toolkit (CaPTk): Breast Radiomics Video
Cancer Imaging Phenomics Toolkit (CaPTk): Predicting Overall and Progression-Free Survival in Glioblastoma Video
Cancer Imaging Phenomics Toolkit (CaPTk): Predicting Glioblastoma Recurrence Location Video
Cancer Imaging Phenomics Toolkit (CaPTk): Distinguishing True- from Pseudo-Progression in Glioblastoma Video
AI for Prostate: Detection and Grading of Prostate Cancer on Multiparametric MRI Video
Quick Annotator: A Tool for Rapidly Annotating Digital Pathology Images Video
Prism - PathDB - Management of Pathology Images and FeatureMaps Slides
PRISM Architecture Fundamentals Video
PRISM Semantic Integration and Datascope Visual Exploration of Clinical Data in TCIA Lung Cancer Collections Video
Preliminary MRI-Based Cellularity Predictions Indicate Abnormal Pathology in Brain Cancer Patients at Autopsy Video
Multiplex Histology Registration Toolkit Video
Developing Quality Ground Truth for Machine-Learning Algorithms in Pathology Video
OHIF Viewer: An Extensible Open-Source Framework for Building Web-Based Imaging Applications to Support Cancer Research Video
Dataset Management in XNAT for Machine Learning Video
Model Training in XNAT with integrated NVIDIA Clara and TensorBoard Video
Creating Millions of Synthetic DICOM Records for Testing Video
Pixel Anonymization on Upload using the XNAT Desktop App Video
Envisioning a DICOMweb Interface with XNAT Data Video
PIIP: Intro to Sedeen - A Freely Available Pathology Viewer Video
EMERSE Import Tool Video
The HemOnc Regimen Browser Video
Genetic counseling at scale using EHR-integrated Chatbot technology Video
An Expanded NLP Schema for Improved Cancer Risk Assessment of Family Health History (FHH) Video
Identifying and Managing Patients Who Meet Evidence-Based Criteria for Genetic Evaluation of Familial Cancer Using the FHIR Data Standard Video
Functional Precision Oncology for Cancer Treatment Selection Video
An Introduction to the Globus Research Data Management Service Video
Globus: The Platform for Research Data Applications and Services Video
MoldelHub.AI: Dissemination Platform for Deep Learning Models Video
Federated Analysis of Health and Genomics Data Video
Patient-Derived Tumor Xenograft (PDX) Finder Video
Connecting Galaxy with the Cancer Research Data Commons Video
Graphic Rendering of Data in Your ITCR Web Tool Video
Unifying and Comparing Multiple Kinase-substrate Prediction Networks for Reference Human Phosphoproteome Video
TransPRECISE: Personalized Network Modeling of the Pan-Cancer Patient and Cell Line Interactome Video