|
Order
|
Presenter
|
Title
|
|
Beibin Li
|
A Unified Machine Learning Package for Cancer Diagnosis
|
|
|
Fusheng Wang
|
Computational pathology software for integrative cancer research with 3D digital slides
|
|
|
Kooresh Shoghi
|
Development of an Open-Source Preclinical Imaging Informatics Platform
|
|
|
Spyros Bakas & Sarthak Pati
|
The Federated Tumor Segmentation (FeTS) platform
|
|
|
Liangqiong Qu & Praveer Singh
|
Tackling Data Heterogeneity for Distributed Learning in Cancer Research
|
|
|
Jonathan Bona
|
TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics
|
|
Order
|
Presenter
|
Title
|
|
Brian Haas
|
Trinity: Transcriptome assembly for genetic and functional analysis of cancer
|
|
|
Marcel Ramos
|
SingleCellMultiModal: Integrated Multi-modal Single Cell Landmark Datasets
|
|
|
Yi Qiao
|
SuperSeeker + Oncogene.iobio: a complete analysis software and interactive web app suite to examine cancer somatic mutations and subclonal evolution for precision oncology
|
|
|
Milovan Suvakov
|
CNVpytor: application to somatic CNA detection
|
|
| Demo |
Derrick DeConti
|
WebMeV: A Robust Platform for Intuitive Genomic Data Analysis
|
|
Allen Lynch
|
Developing Informatics Technologies to Model Cancer Gene Regulation
|
|
Order
|
Presenter
|
Title
|
|
Dexter Pratt
|
NDEx - the Network Data Exchange A Network Commons for Biologists
|
|
|
Brigitte Raumann
|
Building protected data sharing networks to advance cancer risk assessment and treatment
|
|
|
Jeremy Goecks
|
A Federated Galaxy for user-friendly large-scale cancer genomics research
|
|
|
James Eddy
|
Advancing method benchmarking and data sharing through crowd-sourced competitions
|
|
| Demo |
Evan Bolyen
|
Reproducible and accessible cancer microbiome bioinformatics with QIIME 2
|
|
Michael Reich
|
GenePattern and GenePattern Notebook: Integrative Omic Analysis for Cancer Research
|
Day 2 - Wednesday, September 22
|
Order
|
Presenter
|
Title
|
|
Malachi Griffith
|
Informatics tools for identification, prioritization, and clinical application of neoantigens
|
|
|
Melissa Cline
|
Eliminating variants of uncertain significance in BRCA1, BRCA2 and beyond
|
|
|
Team DeepPhe
|
Cancer Deep Phenotype Extraction from Electronic Medical Records
|
|
|
Xuanyi (Lexi) Li
|
Network Analysis for a Data-Driven Approach to Cancer Care
|
|
|
Hua Xu
|
Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
|
|
|
David Hanauer
|
Advanced Development and Dissemination of EMERSE for Cancer Phenotyping from Medical Records
|
|
Order
|
Presenter
|
Title
|
|
Rob Frost
|
Cancer-specific gene set testing
|
|
|
Jun Li
|
TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data
|
|
|
Jim Robinson
|
The Integrative Genomics Viewer (IGV): visualization supporting cancer research
|
|
|
Pablo Tamayo
|
Supporting and evolving Gene Set Enrichment Analysis and the Molecular Signatures Database for cancer research
|
|
|
Ian Holmes
|
Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data
|
|
|
Ino de Brujin
|
cBioPortal for Cancer Genomics
|
|
Order
|
Presenter
|
Title
|
|
Leili Shahriyari
|
Software for personalized childhood osteosarcoma chemotherapy based on a Data driven mathematical model
|
|
|
Wenyuan Li
|
Informatics resources for liquid biopsy research
|
|
|
Joseph Perl
|
The TOPAS Tool for Particle Simulation, a Monte Carlo Simulation Tool for Physics, Biology and Clinical Research
|
|
|
Paul Fitzgerald
|
XCIST project
|
|
|
Janelle Montagne and Atul Deshpande
|
Single-cell and imaging data integration software to spatially resolve the tumor microenvironment
|
|
| Demo |
Phil Montgomery
|
The Cancer Dependency Map portal (DepMap.org)
|