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Tags: ITCR

All Categories (21-40 of 48)

  1. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    05 Feb 2015 | Contributor(s):: Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  2. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    Collections | 13 Apr 2015 | Posted by Brian Haas

  3. ITCR 2016 Annual PI Meeting Presentations

    ITCR 2016 Annual Meeting Notes are available here Posters are available here Participant List is available here (ITCR Group Members Only) Day One Welcome: Juli Klemm and Aviv...

  4. ITCR Annual PI Meeting June 12-13, 2014

    Meeting Venue NCI Shady Grove, 9609 Medical Center Drive, Rockville MD 20850 Rooms 2W910, 2W912 and 2W904 Registration Please register by COB May 9, 2014...

  5. ITCR Monthly Teleconference September 4, 2015

    07 Oct 2015 | Contributor(s):: Juli Klemm


  6. ITCR PI Meeting June 2014 Presentations

    23 Jun 2014 |

    Informatics Technology for Cancer Research (ITCR) Initiative held its Annual PI Meeting on June 12-13, 2014 in Rockville, MD. This series contains the presentations given at the meeting.

  7. Jose Galvez

  8. LesionTracker: Open-source extensible web viewer for oncology research and clinical trials

    Collections | 03 Feb 2017 | Posted by Gordon Harris

  9. Life after MOOCS: Online Science Education Needs a New Revolution

    03 Feb 2017 | | Contributor(s):: Phillip Compeau

    ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

  10. MeV

    Collections | 25 Mar 2015 | Posted by Ishwar Chandramouliswaran

  11. MeV: Multiexperiment Viewer

    Collections | 23 Mar 2016 | Posted by Mervi Heiskanen

  12. NDEx - The Network Data Exchange

    Collections | 10 Apr 2015 | Posted by Rudolf T Pillich

  13. Next-Generation Clustered Heat Maps (NG-CHM)

    Collections | 24 Mar 2016 | Posted by Mervi Heiskanen

  14. Next-Generation Clustered Heat Maps (NG-­CHM)

    07 Oct 2015 | | Contributor(s):: Weinstein John, Bradley Broom

    Clustered Heat Maps (CHMs) have been referred to as the ubiquitous visual icons of post-genomic biology -- the most frequent type of visualization for large molecular profiling databases. However, “traditional” CHMs are static images -- a serious limitation. Accordingly, we have now...

  15. Notes from the ITCR Annual Meeting May 27-28, 2015

    10 Jun 2015 | | Contributor(s):: Ishwar Chandramouliswaran, Juli Klemm

    Notes from the ITCR Annual Meeting May 27-28, 2015

  16. Open source diffusion MRI technology for brain cancer research

    07 Oct 2015 | | Contributor(s):: Lauren O\'Donnell

    Using measurements of water diffusion, dMRI can give unique insights into the microstructure and cellular orientation of tissues. There is a growing awareness in the neurosurgery community that diffusion models must move beyond the current clinical standard of the diffusion tensor for better...

  17. Pathology Image Informatics Platform for visualization, analysis and management

    07 Oct 2015 | | Contributor(s):: Metin Gurcan, Anant Madabhushi, Anne Martel

    This multi-institutional proposal seeks to expand on an existing, freely available pathology image viewer (Sedeen Image Viewer) to create a pathology informatics platform (PIIP) for managing, annotating, sharing, and quantitatively analyzing digital Pathology Imaging (DPI) data. Sedeen has become...

  18. Providing National Cyberinfrastructure to Biologists, esp. Genomicists

    02 Sep 2016 | | Contributor(s):: Tom Doek, Mervi Heiskanen

    National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

  19. Quantitative Image Informatics for Cancer Research (QIICR)

    04 Apr 2014 | | Contributor(s):: Andrey Fedorov, Ron Kikinis

  20. Summarization of Big Data

    07 Nov 2014 | | Contributor(s):: Jeffrey A. Blimes

    All about assay selection...