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  1. Post #1111

    Collections | 16 Nov 2016 | Posted by Mervi Heiskanen

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  2. 3D Slicer

    Collections | 26 Feb 2015 | Posted by Andrey Fedorov

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  3. A Semantic Web-based Quality Assurance Tool for Cancer Study Common Data Elements

    out of 5 stars 

    16 Jun 2015 | | Contributor(s):: Guoqian Jiang

    A poster presentation from the caCDE-QA project (PI: Jiang)  

  4. Activities to Promote Technology Research Collaborations (APTRC) PA-17-143 Pre-Application Webinar

    out of 5 stars 

    24 Feb 2017 | | Contributor(s):: Juli Klemm, Tony Dickherber

    Pre-application seminar held February 24, 2017 for FOA PA-17-143 

  5. Advanced Development of TIES - A Clinical Text Search Engine

    out of 5 stars 

    18 Feb 2014 | | Contributor(s):: Rebecca Crowley

    Archived human tissues are an essential resource for translational research. Formalin-fixed, paraffin-embedded (FFPE) tissues from cancer patients are used in a wide range of assays, including RT-PCR, SNP profiling, multiplex biomarkers, imaging biomarkers, targeted exome, whole exome, and whole...

  6. An Extensible and Scalable Knowledge System Architecture for Cancer Research

    out of 5 stars 

    06 May 2016 | | Contributor(s):: Daniel Crichton

    ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.  

  7. Analysis, integration and visualization of DNA methylation sequencing data

    out of 5 stars 

    07 Nov 2014 | | Contributor(s):: Maureen Sartor

    Integrative epigenomic/genomic profiling and biomarker discovery of HPV+ and HPV- squamous cancers.

  8. Apache cTAKES

    Collections | 13 Apr 2015 | Posted by cTakes ApacheNlp

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  9. Bioconductor help / training / outreach resources

    Collections | 17 Sep 2014 | Posted by Martin Morgan

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  10. Biomedical Evidence Graph

    out of 5 stars 

    03 Oct 2014 | | Contributor(s):: Josh Stuart

  11. Brain Cancer Imaging Analytics

    out of 5 stars 

    02 Oct 2015 | | Contributor(s):: Christos Davatzikos

    The transition of oncologic imaging from its “industrial era” to it is “information era” demands analytical methods that 1) extract information from this data that is clinically and biologically relevant; 2) integrate imaging, clinical, and genomic data via rigorous...

  12. Cistrome Analysis Pipeline

    Collections | 25 Mar 2015 | Posted by Ishwar Chandramouliswaran

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  13. Cloud Supercomputer Aided Diagnostic Imaging Decision Support System

    out of 5 stars 

    18 Jun 2014 | | Contributor(s):: Hiro Yoshida

    ITCR PI meeting presentation on project status.

  14. CRAVAT - Cancer-Related Analysis of Variants

    Collections | 21 Apr 2015 | Posted by Michael C Ryan

    https://ncihub.cancer.gov/groups/itcr/collections/itcr-training-assets

  15. CRAVAT - Cancer-Related Analysis of Variants Toolkit

    out of 5 stars 

    23 Jun 2015 | | Contributor(s):: Rachel Karchin, Michael C Ryan

    cravat is a bioinformatics pipeline : ; that performs high-throughput cancer-related analysis of variants. it : ; utilizes three applications: CHASM (Cancer-Specific Analysis of Somatic Mutations), VEST and SVN-Get. More information on these tools is available at CHASM Software.Release...

  16. CRAVAT Introduction Video - Cancer Related Analysis of Variants

    out of 5 stars 

    03 Dec 2014 | | Contributor(s):: Michael C Ryan

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  17. Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

    out of 5 stars 

    06 Jan 2017 | | Contributor(s):: Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

    ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

  18. GenomeSpace Presentation

    out of 5 stars 

    08 Feb 2016 | | Contributor(s):: Michael Reich

    GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

  19. Informatics to enable Routine Personalized Cancer Therapy (IPCT)

    out of 5 stars 

    18 Feb 2014 | | Contributor(s):: Elmer V. Bernstam, Funda Meric-Bernstam

  20. Informatics Tools for High-throughput Analysis of Cancer Mutations

    out of 5 stars 

    15 Jan 2014 | | Contributor(s):: Michael C Ryan, Rachel Karchin