Breast Cancer Crossword

20 Nov 2015 | Teaching Materials | Contributor(s): Katelyn Schifano

This crossword is designed for use in social media as well as patient waiting areas.

Nanomaterial Registry Update

22 Oct 2015 | Presentations | Contributor(s): Karmann Mills, Anthony Hickey, Alexander Tropsha

Nano WG weekly meeting October 22,2015

"Show me the data!" Practical solutions to interactive visual analysis for big data.

18 Sep 2015 | Presentations | Contributor(s): Samuel Payne

Nano WG September 10, 2015.Intuitive data visualization is critical for biomedical data analysis; especially essential is the ability for non-computational scientists to productively browse the data and apply their domain knowledge.  We present Active Data Biology, a web-based visual...

Screening for Small Molecules: Target Discovery Against miRNAs for Breast Cancer Treatment

18 Aug 2015 | Presentations | Contributor(s): Odemaris Narvaez del Pilar

Breast cancer is one of the leading causes of cancer related deaths and morbidity among women worldwide. Identifying new targets and developing new therapies is very important in order to improve patient outcomes and minimize this health burden. MicroRNAs, a type of non-coding RNA, are potential...

Support Access to NPO's Structure and Content

13 Aug 2015 | Presentations | Contributor(s): Michael Halper, Vladimir Ventura, Yehoshua Perl

•Abstraction Networks (“AbNs”) for Ontologies•Two example AbNs:–Area taxonomy–Partial-area taxonomy•BLUOWL: taxonomy-based software tool•Application to the NPO•Conclusions

A Brief History of OpenTox

25 Jun 2015 | Presentations | Contributor(s): Barry Hardy

Nano WG June 25, 2015 The history and challenges of OpenTox developments and the potential of its community, framework and principles applied to advancing safety assessment goals.  

UCSC Biomedical Evidence Graph Demonstration

03 Jun 2015 | Presentations | Contributor(s): Josh Stuart, ellrott

The BMEG demonstration includes the following elements: 1) Organization of crowd-source challenges to develop best-of-breed methods including an overview of current DREAM projects, living benchmarks; 2) Enabling cloud-ready methods for mass compute with examples of recently...

Seven Bridges Cancer Genomics Cloud Pilot TCGA 2015 symposium workshop presentation

23 May 2015 | Presentations | Contributor(s): Deniz Kural

Basic and translational cancer research creates the need to disseminate, manage, and interpret large heterogeneous datasets. The volume and complexity of the data now routinely generated by high-throughput technologies has become too costly for individual laboratories and many research...

Molecule & Particle Differentiation Using Electrophoresis

28 Apr 2015 | Presentations | Contributor(s): Frederick C. Klaessig, Sharon Ku

Nano WG April 16, 2015

Nanoinformatics Workshop 2015

23 Mar 2015 | Presentations | Contributor(s): Mark Tuominen, Mervi Heiskanen

Nano WG March 19, 2015.

Why in the world do we need a nanomaterials description system – How CODATA and VAMAS answers that question

12 Mar 2015 | Presentations | Contributor(s): John Rumble

Nano WG March12, 2015

So What Can We Do With Nano Informatics? – Leveraging Decision Analytic Tools

22 Jan 2015 | Presentations | Contributor(s): Igor Linkov, Matthew Bates

Jan 22, 2015 meeting                  Nanotechnology Working Group Matthew E. Bates & Igor Linkov Risk & Decision Science Team Environmental Laboratory, Engineer Research and Development Center, US Army...

Video: Learn how TIES can help manage research resources

16 Jan 2015 | Presentations | Contributor(s): Girish Chavan, Rebecca Crowley

https://www.youtube.com/watch?v=EzjAo9LJ4tg  

Some Thoughts on Reproducibility

05 Dec 2014 | Presentations | Contributor(s): John Rumble

Nano WG December 4, 2014

Data, Metadata and "Data Quality" for Databases

05 Dec 2014 | Presentations | Contributor(s): Frederick C. Klaessig, Mervi Heiskanen

Nano WG December 4, 2014

Data ReproducibilityNanotechnology Knowledge Infrastructure Data Curation

05 Dec 2014 | Presentations | Contributor(s): Martin Fritts

Nano WG presentation on December 4, 2014

CRAVAT Introduction Video - Cancer Related Analysis of Variants

03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

LBL ICBP50 integrative genomic data

13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data (ICBP_U133a.zip) Affymetrix splice junction exon-exon data (ICBP_Junction.zip) Affymetrix...

Baylor Residual breast cancer

13 Nov 2014 | Downloads | Contributor(s): Creighton C, Lewis M, Chang J, Jonathan Bistline

Residual breast cancers after conventional therapy display mesenchymal as tumor-initiating features.  There are four (4) files included in this study: Sample Annotation (combined_sample_annotation.txt) Gene expression data from CD44+/CD24- cells sorted by flow cytometry (GSE7513.gct) Human...