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  1. CWIG_May10th2020_RedHat_Recording

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    04 Nov 2020

  2. CWIG_Nov08th2019_Pathos_Doig_Slides

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    04 Nov 2020

  3. CWIG_Nov08th2020_PathOS_Recording

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    04 Nov 2020

  4. CWIG_Oct09th2020_Tibanna_SooLee_Recording

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    04 Nov 2020

  5. CWIG_OCT11th2020_JohannesKoster-Recording

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    04 Nov 2020

  6. CWIG_Oct152019_PDCIntegrationSBG_Slides

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    04 Nov 2020

  7. CWIG_Sept11th2020_Avi Ma'ayan_Recording

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    04 Nov 2020

  8. CWIG_Sept13th2019_McKerrow_IntegratingMultiOmics_Slides

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    04 Nov 2020

  9. CWIG_Sept13th2019_SBG_Recording

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    04 Nov 2020

  10. Integrated analysis of breast cancer cell lines reveals unique signaling pathways

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    16 Sep 2014 | Contributor(s): Laura M Heiser, Nicholas J Wang, Carolyn L Talcott, Keith R Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara L Weber, Sylvie Laquerre, Jeffrey R Jackson, Richard F Wooster, Wen Lin Kuo, Joe W Gray, Paul T Spellman

    AbstractBackgroundCancer is a heterogeneous disease resulting from the accumulation of genetic defects that negatively impact control of cell division, motility, adhesion and apoptosis. Deregulation in signaling along the EgfR-MAPK pathway is common in breast cancer, though the manner in which...

  11. Integrative Cancer Biology Program Datasets

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    26 Apr 2016 | Series | Contributor(s): Jonathan Bistline, Michael Reich

    The NCI-ICBP promotes an integrative/systems approach to the study of cancer biology. The Program encourages scientists to study cancer as a complex biological system. Information gained from these studies are used to build reliable and testable predictive computation models of cancer processes...

  12. ITCR Monthly Teleconference September 4, 2015

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    07 Oct 2015 | Presentations | Contributor(s): Juli Klemm

     

  13. LBL ICBP50 integrative genomic data

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    13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

    From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data (ICBP_U133a.zip) Affymetrix splice junction exon-exon data (ICBP_Junction.zip) Affymetrix...

  14. Next-Generation Clustered Heat Maps (NG-­CHM)

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    07 Oct 2015 | Presentations | Contributor(s): Weinstein John, Bradley Broom

    Clustered Heat Maps (CHMs) have been referred to as the ubiquitous visual icons of post-genomic biology -- the most frequent type of visualization for large molecular profiling databases. However, “traditional” CHMs are static images -- a serious limitation. Accordingly, we have now...

  15. October 2021 CWIG Webinar Slides - Arun Isaac

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    27 Dec 2021 | Downloads | Contributor(s): Alan Zheng

  16. October 2021 CWIG Webinar Slides - Pjotr Prins

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    27 Dec 2021 | Downloads | Contributor(s): Alan Zheng

  17. Open source diffusion MRI technology for brain cancer research

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    07 Oct 2015 | Presentations | Contributor(s): Lauren O\'Donnell

    Using measurements of water diffusion, dMRI can give unique insights into the microstructure and cellular orientation of tissues. There is a growing awareness in the neurosurgery community that diffusion models must move beyond the current clinical standard of the diffusion tensor for better...

  18. Overview on HUBzero - Building Scientific Communities Online

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    03 Sep 2013 | Teaching Materials | Contributor(s): Michael McLennan

    This is a white paper/publication on the HUB and how one can build online communities using the HUBzero platform. See the tab on supporting documents for a video presentation.

  19. Overview: The HUBzero Platform for Scientific Collaboration

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    18 Dec 2013 | Presentations | Contributor(s): Michael McLennan

    This web site was created using a collaborative infrastructure called HUBzero, developed by Purdue University. HUBzero is the basis of nanoHUB.org and more than 50 other sites covering a wide range of scientific disciplines, including bio-fuels, microelectromechanical systems, cancer research,...

  20. Pathology Image Informatics Platform for visualization, analysis and management

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    07 Oct 2015 | Presentations | Contributor(s): Metin Gurcan, Anant Madabhushi, Anne Martel

    This multi-institutional proposal seeks to expand on an existing, freely available pathology image viewer (Sedeen Image Viewer) to create a pathology informatics platform (PIIP) for managing, annotating, sharing, and quantitatively analyzing digital Pathology Imaging (DPI) data. Sedeen has become...