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Next-Generation Clustered Heat Maps (NG-CHM)
07 Oct 2015 | Contributor(s): Weinstein John, Bradley Broom
Clustered Heat Maps (CHMs) have been referred to as the ubiquitous visual icons of post-genomic biology -- the most frequent type of visualization for large molecular profiling databases. However, “traditional” CHMs are static images -- a serious limitation. Accordingly, we have now...
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Open source diffusion MRI technology for brain cancer research
07 Oct 2015 | Contributor(s): Lauren O\'Donnell
Using measurements of water diffusion, dMRI can give unique insights into the microstructure and cellular orientation of tissues. There is a growing awareness in the neurosurgery community that diffusion models must move beyond the current clinical standard of the diffusion tensor for better...
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ITCR Monthly Teleconference September 4, 2015
07 Oct 2015 | Contributor(s): Juli Klemm
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Brain Cancer Imaging Analytics
02 Oct 2015 | Presentations | Contributor(s): Christos Davatzikos
The transition of oncologic imaging from its “industrial era” to it is “information era” demands analytical methods that 1) extract information from this data that is clinically and biologically relevant; 2) integrate imaging, clinical, and genomic data via rigorous...
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Support Access to NPO's Structure and Content
13 Aug 2015 | Presentations | Contributor(s): Michael Halper, Vladimir Ventura, Yehoshua Perl
•Abstraction Networks (“AbNs”) for Ontologies•Two example AbNs:–Area taxonomy–Partial-area taxonomy•BLUOWL: taxonomy-based software tool•Application to the NPO•Conclusions
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HUBzero: A platform for dissemination and collaboration in Computational Science and Engineering
07 Aug 2015 | Publications | Contributor(s): Michael McLennan, Rick Kennell
The HUBzero cyberinfrastructure lets scientific researchers work together online to develop tools. Other researchers can then access the resulting tools using an ordinary Web browser and launch simulation runs on the national Grid infrastructure, without having to download or...
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A Brief History of OpenTox
25 Jun 2015 | Presentations | Contributor(s): Barry Hardy
Nano WG June 25, 2015 The history and challenges of OpenTox developments and the potential of its community, framework and principles applied to advancing safety assessment goals.
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Molecule & Particle Differentiation Using Electrophoresis
28 Apr 2015 | Presentations | Contributor(s): Frederick C. Klaessig, Sharon Ku
Nano WG April 16, 2015
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Nanoinformatics Workshop 2015
23 Mar 2015 | Presentations | Contributor(s): Mark Tuominen, Mervi Heiskanen
Nano WG March 19, 2015.
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Why in the world do we need a nanomaterials description system – How CODATA and VAMAS answers that question
12 Mar 2015 | Presentations | Contributor(s): John Rumble
Nano WG March12, 2015
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The World of HUBzero
11 Feb 2015 | Presentations | Contributor(s): Michael McLennan
This part of a demo/presentation from the Force2015 conference giving you a 9 1/2 minute overview of the HUBzero platform and its capabilities - NCIP Hub is based on the HUBzero platform.[[Youtube(p_hpwoiXvEE,300,200)]]
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So What Can We Do With Nano Informatics? – Leveraging Decision Analytic Tools
22 Jan 2015 | Presentations | Contributor(s): Igor Linkov, Matthew Bates
Jan 22, 2015 meeting Nanotechnology Working Group Matthew E. Bates & Igor Linkov Risk & Decision Science Team Environmental Laboratory, Engineer Research and Development Center, US Army...
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Some Thoughts on Reproducibility
05 Dec 2014 | Presentations | Contributor(s): John Rumble
Nano WG December 4, 2014
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Data, Metadata and "Data Quality" for Databases
05 Dec 2014 | Presentations | Contributor(s): Frederick C. Klaessig, Mervi Heiskanen
Nano WG December 4, 2014
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Data ReproducibilityNanotechnology Knowledge Infrastructure Data Curation
05 Dec 2014 | Presentations | Contributor(s): Martin Fritts
Nano WG presentation on December 4, 2014
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An ISA-TAB Nano compliant data management system for nanosafety modelling
10 Sep 2014 | Presentations | Contributor(s): Robert Rallo
Dr. Robert RalloAssociate Professor , Universitat Rovira i Virgili, Departament d'Enginyeria Informàtica i MatemàtiquesTarragona, SpainNano WG presentation July 10, 2014[[Image(<Capture.PNG>)]]
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Design and Applications of the CEINT Database
10 Sep 2014 | Presentations | Contributor(s): Sandra Karcher, Yuan Tian
Nano WG presentation September 4, 2014Post-doctoral research associates Dr. Sandra Karcher and Dr. Yuan Tian, Duke University
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Tips for creating Standards Group Pages
22 May 2014 | Teaching Materials | Contributor(s): Denise Warzel
The Standards Portal offers a way to organize dsicussions and resources related to a set of standards. The organizing construct can be either a community interested in sharing data or using common tools, or by a particular type of standard, for example demographics or biomarkers. An example of a...
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Getting Started at the Standards Portal Pilot
27 Mar 2014 | Teaching Materials | Contributor(s): Denise Warzel, Ann Christine Catlin
The Standards Portal Pilot is now available! (Click the link for the portal home page.)Why use the standards portal? See more information about its genesis and use cases in a study conducted for the VCDE caBIG community here. If you are participating in the Pilot, please join the...
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Standards Portal CRFs Complete View
19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin
This DataView resource page is for the Standards Portal CRFsUse this DataView to browse,search, explore and download the complete set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were assembled by...