Skip to main content
The NCI Community Hub will be retiring in May 2024. For more information please visit the NCIHub Retirement Page:https://ncihub.cancer.gov/groups/ncihubshutdown/overview
close

Resources: All

Submit a resource

Find a resource
  1. imaging x
  2. crchd x
  3. cancer x
  4. itcr x
  5. nciphub x

  1. CRAVAT - Cancer-Related Analysis of Variants Toolkit

    0.0 out of 5 stars 

    23 Jun 2015 | Contributor(s): Rachel Karchin, Michael C Ryan

    cravat is a bioinformatics pipeline : ; that performs high-throughput cancer-related analysis of variants. it : ; utilizes three applications: CHASM (Cancer-Specific Analysis of Somatic Mutations), VEST and SVN-Get. More information on these tools is available at CHASM Software.Release...

  2. Tools for Creation of Integrated Data Repository for Cancer Research

    0.0 out of 5 stars 

    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

  3. A Semantic Web-based Quality Assurance Tool for Cancer Study Common Data Elements

    0.0 out of 5 stars 

    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    A poster presentation from the caCDE-QA project (PI: Jiang)  

  4. Notes from the ITCR Annual Meeting May 27-28, 2015

    0.0 out of 5 stars 

    10 Jun 2015 | Downloads | Contributor(s): Ishwar Chandramouliswaran, Juli Klemm

    Notes from the ITCR Annual Meeting May 27-28, 2015

  5. NCIP Hub QIN Workshop - March 3, 2015

    0.0 out of 5 stars 

    19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

    Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

  6. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    0.0 out of 5 stars 

    05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  7. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    0.0 out of 5 stars 

    05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  8. Report to the DICOM Standards Committee - December 4, 2015

    0.0 out of 5 stars 

    10 Dec 2014 | Downloads | Contributor(s): Joseph Kalen

  9. CRAVAT Introduction Video - Cancer Related Analysis of Variants

    0.0 out of 5 stars 

    03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  10. Databases on NCIP Hub

    0.0 out of 5 stars 

    21 Nov 2014 | Teaching Materials | Contributor(s): Patrick Mulligan

    Overview and demo of the database functionality on NCIP Hub. Further documentation on database functionality is included in the "Supporting Documentation" section.

  11. Building Online Scientific Communities via NCIP Hub

    0.0 out of 5 stars 

    17 Nov 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran

    Overview of how NCIP Hub can be used to build online scientific communities.

  12. Multiclass cancer diagnosis using tumor gene expression signatures

    0.0 out of 5 stars 

    10 Nov 2014 | Downloads

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

  13. Analysis, integration and visualization of DNA methylation sequencing data

    0.0 out of 5 stars 

    07 Nov 2014 | Presentations | Contributor(s): Maureen Sartor

    Integrative epigenomic/genomic profiling and biomarker discovery of HPV+ and HPV- squamous cancers.

  14. Summarization of Big Data

    0.0 out of 5 stars 

    07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  15. Biomedical Evidence Graph

    0.0 out of 5 stars 

    03 Oct 2014 | Presentations | Contributor(s): Josh Stuart

  16. Tools to Analyze Morphology and Spatially Mapped Molecular Data

    0.0 out of 5 stars 

    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  17. Resources on NCIP Hub

    0.0 out of 5 stars 

    22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

  18. Talking Science: Designing and Delivering Successful Oral Presentations

    0.0 out of 5 stars 

    18 Sep 2014 | Downloads | Contributor(s): Shawn Mullen

  19. "DICOM 301" - Enhanced Multi-frame and Quantitation:

    0.0 out of 5 stars 

    04 Sep 2014 | Presentations | Contributor(s): David Clunie

     In-depth presentation on the Digital Imaging and Communications in Medicine StandardA one-hour  presentation of DICOM presented by Dr. David Clunie for the members of DICOM Working Group 30, Small Animal Imaging. 

  20. pRainBow optical barcoding library

    0.0 out of 5 stars 

    14 Aug 2014 | Reagents | Contributor(s): Andries Zijlstra

    Note: this is a work in progress. About: pRainBow is a library of lentiviral vectors designed to allow for fluorescent labeling of cells with one of 7 distinct fluorescent proteins. Composition: How to obtain: How to cite: Other information:Good global...