Skip to main content
The NCI Community Hub will be retiring in May 2024. For more information please visit the NCIHub Retirement Page:https://ncihub.cancer.gov/groups/ncihubshutdown/overview
close

Vanderbilt Single-cell motility data

By Vito Quaranta1, Shawn Garbett1, Jonathan Bistline2

1. Vanderbilt University Medical Center 2. Broad Institute

Download (XLS)

Licensed according to this deed.

Category

Downloads

Published on

Abstract

All epithelial-derived cell lines (MCF10A, AT1, and CA1d) were plated on laminin-332, and incubated under either "mild" or "harsh" microenvironmental conditions (full tissue culture media vs. deprived media (-fetal bovine serum, -EGF), respectively). Single-cell motility was tracked for 4 hours, with images being taken via bright field microscopy every 5 minutes. There are nineteen (19) files in this study:

1-4. Cell Motility raw measures (071218+quantitation2.xls to 080313+quantitation2.xls)
        Raw measures from Metamorph (includes image name, x,y coordinates, distance traveled, velocity summary', etc), These spreadsheetrs contains all the POOLED, AVERAGE data for each cell type/substrate/condition for that day.

5-10. Cell motility movies (*.mov)
         Images/movies can be assessed for various parameters, including:  single-cell speed, surface area, turn angle distribution, persistence, dynamic expansion /contraction cell activity (DECCA), etc.

11-19.  Sample Annotation (*.xml, cell_motility_sample_annotation.txt, Vanderbilt_single_cell_motility_video_link_annotation.txt)

These datasets have been exported from the Broad Institute's ICBP Data & Analysis Portal.

 

Cite this work

Researchers should cite this work as follows:

  • Vito Quaranta; Shawn Garbett; Jonathan Bistline (2014), "Vanderbilt Single-cell motility data," https://ncihub.cancer.gov/resources/652.

    BibTex | EndNote

Tags