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  1. The World of HUBzero

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    11 Feb 2015 | Contributor(s): Michael McLennan

    This part of a demo/presentation from the Force2015 conference giving you a 9 1/2 minute overview of the HUBzero platform and its capabilities - NCIP Hub is based on the HUBzero platform.[[Youtube(p_hpwoiXvEE,300,200)]]

  2. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

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    05 Feb 2015 | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  3. Rstudio IDE for R

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    22 May 2014 | Tools

    RStudio is a GUI for R, the statistical programming language.

  4. So What Can We Do With Nano Informatics? – Leveraging Decision Analytic Tools

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    22 Jan 2015 | Presentations | Contributor(s): Igor Linkov, Matthew Bates

    Jan 22, 2015 meeting                  Nanotechnology Working Group Matthew E. Bates & Igor Linkov Risk & Decision Science Team Environmental Laboratory, Engineer Research and Development Center, US Army...

  5. QIN Software tools inventory summary

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    20 Jan 2015 | Downloads | Contributor(s): Andrey Fedorov

    Abstract QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as...

  6. Video: Learn how TIES can help manage research resources

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    14 Jan 2015 | Presentations | Contributor(s): Girish Chavan, Rebecca Crowley

    https://www.youtube.com/watch?v=EzjAo9LJ4tg  

  7. WSI_WorkingGroupSurvey

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    18 Dec 2014 | Publications | Contributor(s): Brandon D. Gallas

    What is the WSI working group about? What will the WSI working group do? GOOD QUESTIONS? The answer to both depends on you!   We have created a survey to understand who you are (WSI working group member), what are your interests, and what you would like the working group to do. Thank you for...

  8. Report to the DICOM Standards Committee - December 4, 2015

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    10 Dec 2014 | Downloads | Contributor(s): Joseph Kalen

  9. Guidelines for Releasing Research Software

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    09 Dec 2014 | Teaching Materials | Contributor(s): Natasha Wright, Ishwar Chandramouliswaran, Juli Klemm, Carl McCabe, Richard Lambert, Wendy Patterson

    Click on the black "view resource"button above to access the guidelines document.to encourage open software development by the nci intramural research community, these guidelines offer guidance for releasing research software source code in a free open access or open source format. this...

  10. Some Thoughts on Reproducibility

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    05 Dec 2014 | Presentations | Contributor(s): John Rumble

    Nano WG December 4, 2014

  11. Data, Metadata and "Data Quality" for Databases

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    05 Dec 2014 | Presentations | Contributor(s): Frederick C. Klaessig, Mervi Heiskanen

    Nano WG December 4, 2014

  12. Data Reproducibility Nanotechnology Knowledge Infrastructure Data Curation

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    05 Dec 2014 | Presentations | Contributor(s): Martin Fritts

    Nano WG presentation on December 4, 2014

  13. CRAVAT Introduction Video - Cancer Related Analysis of Variants

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    02 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  14. NCIP Hub Webinar Series

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    21 Nov 2014 | Series

    Monthly webinars are hosted to give NCIP Hub users training on different NCIP Hub functionality. This Series will contain the recordings and supporting documentation from the webinars.

  15. Databases on NCIP Hub

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    21 Nov 2014 | Teaching Materials | Contributor(s): Patrick Mulligan

    Overview and demo of the database functionality on NCIP Hub. Further documentation on database functionality is included in the "Supporting Documentation" section.

  16. Visual representation of my DRAFT "phase/state model"

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    20 Nov 2014 | Downloads | Contributor(s): Ute Reichling

    ·         I strongly believe that having a phase/state model (even if it ends up looking totally different than the way I’ve envisioned it) is essential.  It will allow us to… o   Map the detailed workflow steps to the...

  17. Building Online Scientific Communities via NCIP Hub

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    17 Nov 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran

    Overview of how NCIP Hub can be used to build online scientific communities.

  18. Sustainable Data Curation and Dissemination for Thermodynamics

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    17 Nov 2014 | Presentations | Contributor(s): Kenneth Kroenlein

    Exponential growth in publication rates and data generation in thermophysical properties has yielded tremendous challenges as well as potential rewards for data analysis groups. Data volumes have grown to such a degree that many traditional data collection and interpretation approaches cannot...

  19. Vanderbilt PC9 cell line exposed to varying concentrations of erlotinib

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    13 Nov 2014 | Downloads | Contributor(s): Vito Quaranta, Shawn Garbett, Jonathan Bistline

    Histone H2B labeled PC9 NSCLC cell line exposed to varying concentrations of erlotinib.  There are twenty-five (25) files in this study: 1-24. Cell Motility Movies (*.mov) 25. Sample Annotation (2011-06-13_PC9_erlot_plate_map.txt) These datasets have been exported from the Broad...

  20. Vanderbilt Single-cell motility data

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    13 Nov 2014 | Downloads | Contributor(s): Vito Quaranta, Shawn Garbett, Jonathan Bistline

    All epithelial-derived cell lines (MCF10A, AT1, and CA1d) were plated on laminin-332, and incubated under either "mild" or "harsh" microenvironmental conditions (full tissue culture media vs. deprived media (-fetal bovine serum, -EGF), respectively). Single-cell motility was...