Skip to main content

Resources: All

Find a resource
  1. Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms

    04 Apr 2016 | Publications | Contributor(s): Vincent Bernard

    Bernard V, Fleming J, Maitra A. Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms. Surgical Oncology Clinics of North America. Vol. 25 Iss 2, April 2016. PubMed PMID: 27013361 Carcinogenic progression in the pancreas arises...

  2. 2015 Cancer Biology Course

    24 Mar 2016 | Teaching Materials | Contributor(s): Sherri De Jesus

  3. Site Visits 2016

    15 Mar 2016 | Presentations | Contributor(s): Chris Hartshorn, Dorothy Farrell, Piotr Grodzinski, Christina Liu, Stephanie Morris, Natalie Fedorova Abrams

    Attached is the slide deck for the OCNR 2016 site visits of Alliance investigators.  It includes much information as to the program office's current news, requests, and funding.

  4. CRISPR/Cas9 system can be used to target essential genes

    10 Mar 2016 | Presentations | Contributor(s): Raisa Reyes Castro

      The CRISPR/Cas (clustered regularly interspaced short palindromic repeat and CRISPR-associated nucleases) system has revolutionized the way we generate animal models. While it is very efficient, fast, and less expensive than standard techniques; it is not a well characterized system. One...

  5. Role of microRNA-203 and microRNA-205 in Lung Cancer Metastasis

    10 Mar 2016 | Presentations | Contributor(s): Carolina Jannet Garcia Garcia

  6. Evaluating CPA as a cytotoxic agent in endometrial and ovarian carcinoma cells

    10 Mar 2016 | Presentations | Contributor(s): Carolina Jannet Garcia Garcia

  7. Novel Stereological Methods for Alveolar Cell Quantification in the Mouse Lung

    10 Mar 2016 | Presentations | Contributor(s): Odemaris Narvaez del Pilar

    Understanding whether lung development occurs by increase in cell size or cell number can lead to relevant clinical implications in phenomena such catch up growth, chronic neonatal lung disease and cancer. Although alveolar type 1 (AT1) and type 2 (AT2) cells have been quantified in the past,...

  8. Genetic and epigenetic modifications of Sox2 contribute to the invasive phenotype of malignant gliomas

    08 Mar 2016 | Publications | Contributor(s): Nahir Cortes

    Alonso MM, Diez-Valle R, Manterola L, Rubio A, Liu D, Cortes-Santiago N, Urquiza L, Jauregi P, Lopez de Munain A, Sampron N, Aramburu A, Tejada-Solís S, Vicente C, Odero MD, Bandrés E, García-Foncillas J, Idoate MA, Lang FF, Fueyo J, Gomez-Manzano C. Genetic and epigenetic...

  9. Resources on NCIP Hub (2016)

    02 Mar 2016 | Presentations | Contributor(s): Lisa Mahoney

    This presentation is part of NCIP Hub's 2016 Webinar Series. It provides an overview of what resources are, when and why to use resources and how to upload resources to NCIP Hub.

  10. caNanoLab Demo

    29 Feb 2016 | Presentations | Contributor(s): Sharon Gaheen

    This is a recording of the caNanoLab Demo at the NCI Alliance for Nanotechnology in Cancer meeting in November 2015.

  11. PORTS v.1.1 matlab software

    22 Feb 2016 | Downloads | Contributor(s): Larry A. Pierce

    These are the functions used by the PORTS software suite for computing texture metrics. Three example scripts are included as a tutorial for use. v1.1 (PORTS_20160411) -- Minor bug fixes and included a third example script that illustrates DICOM reading and interpolation of non-cubic voxels...

  12. Nano WG: NCI's Alliance for Nanotechnology in Cancer Program: Phase III and Data Sharing Plans

    18 Feb 2016 | Presentations | Contributor(s): Stephanie Morris

    Launched in 2004, the National Cancer Institute (NCI) Alliance for Nanotechnology in Cancer (Alliance) advanced a number of promising nanotechnologies for the diagnosis, treatment and prevention of cancer in its first ten years. This progress led NCI to announce in September 2015 its continued...

  13. SCCDCN2/Community Core/NON CHE Reporting List

    16 Feb 2016 | Teaching Materials | Contributor(s): Dr Heather Brandt

    The prostate cancer program, Prostate Cancer Screening: Is It Right For Me?, was developed in collaboration with the African-American Baptist churches in South Carolina for members of the African-American community in South Carolina. The focus of the program is on promoting informed decision...

  14. GenomeSpace Presentation

    08 Feb 2016 | Presentations | Contributor(s): Michael Reich

    GenomeSpace ( is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

  15. Radiomics: Images Are More than Pictures, They Are Data

    05 Feb 2016 | Publications | Contributor(s): Robert J Giiles, Paul E Kinahan, Hedvig Hricak

    Robert J. Gillies, PhD Paul E. Kinahan, PhD Hedvig Hricak, MD, PhD, Dr(hc) In the past decade, the field of medical image analysis has grown exponentially, with an increased number of pattern recognition tools and an increase in data set sizes. These advances have facilitated the development of...

  16. cBioPortal

    29 Jan 2016 | External Applications | Contributor(s): Zhiping Gu

    The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets, The current available studies: TCGA and ICGC projects, -cell line, prostate mskcc, esophageal OR stomach , Ovarian serous, and breast cancer. Available datatype: genetic...

  17. Antibodies to Human and Mouse Cell-Surface Markers Tested for BD Phosflow Protocols

    29 Jan 2016 | Reagents | Contributor(s): Zhiping Gu

    Many cell-surface antigens are sensitive to fixation/permeabilization procedures, resulting in loss of recognition by their respective antibodies. For your information, BD Biosciences has tested many antibodies conjugated to various fluorochromes under several fixation/permeabilization...

  18. Nanomaterial-Biological Interactions Knowledgebase

    21 Jan 2016 | Presentations | Contributor(s): Stacey L Harper

    Nano WG January 14, 2016 The NBI Knowledgebase is intended to offer industry, academia, the general public, and regulatory agencies a mechanism to rationally inquire for unbiased interpretation of nanomaterial exposure effects in biological systems. The knowledgebase serves as a repository for...

  19. Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano

    21 Jan 2016 | Presentations | Contributor(s): Richard Liam Marchese Robinson

    Nano WG meeting January 21, 2016 This is an updated version of the talk originally delivered at the CompNanoTox2015 conference. [1] Marchese Robinson, R.; Richarz, A.N.; Cassano, A.; Cronin, M.T.D; Rallo, R. (2015): Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano. FigShare....

  20. Packed Spheres Texture Reference Object

    30 Dec 2015 | Downloads | Contributor(s): Larry Pierce

    The Packed Sphere object represents hexagonally-packed spheres with 8 mm diameter and of uniform density. The image volume consists of 122x122x34 cubic voxels, 0.5 mm on edge.