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  1. NCIP Hub QIN Workshop - March 3, 2015

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    19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

    Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

  2. The World of HUBzero

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    11 Feb 2015 | Presentations | Contributor(s): Michael McLennan

    This part of a demo/presentation from the Force2015 conference giving you a 9 1/2 minute overview of the HUBzero platform and its capabilities - NCIP Hub is based on the HUBzero platform.[[Youtube(p_hpwoiXvEE,300,200)]]

  3. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

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    05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  4. CRAVAT Introduction Video - Cancer Related Analysis of Variants

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    03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  5. Databases on NCIP Hub

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    21 Nov 2014 | Teaching Materials | Contributor(s): Patrick Mulligan

    Overview and demo of the database functionality on NCIP Hub. Further documentation on database functionality is included in the "Supporting Documentation" section.

  6. Building Online Scientific Communities via NCIP Hub

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    17 Nov 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran

    Overview of how NCIP Hub can be used to build online scientific communities.

  7. Analysis, integration and visualization of DNA methylation sequencing data

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    07 Nov 2014 | Presentations | Contributor(s): Maureen Sartor

    Integrative epigenomic/genomic profiling and biomarker discovery of HPV+ and HPV- squamous cancers.

  8. Summarization of Big Data

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    07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  9. Biomedical Evidence Graph

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    03 Oct 2014 | Presentations | Contributor(s): Josh Stuart

  10. Tools to Analyze Morphology and Spatially Mapped Molecular Data

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    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  11. Resources on NCIP Hub

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    22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

  12. ITCR PI Meeting June 2014 Presentations

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    23 Jun 2014 | Series

    Informatics Technology for Cancer Research (ITCR) Initiative held its Annual PI Meeting on June 12-13, 2014 in Rockville, MD. This series contains the presentations given at the meeting.

  13. Cloud Supercomputer Aided Diagnostic Imaging Decision Support System

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    18 Jun 2014 | Presentations | Contributor(s): Hiro Yoshida

    ITCR PI meeting presentation on project status.

  14. Why Should You Care About Accessibility of Your Contributed Content?

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    02 Jun 2014 | Teaching Materials

    Most people today can hardly conceive of life without the internet. Some have argued that no other single invention has been more revolutionary since Gutenberg's printing press in the 1400s. Now, at the click of a mouse, the world can be "at your fingertips"—that is, if you...

  15. Collections on NCIP Hub

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    02 Jun 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran, Lisa Mahoney

    NCIP Hub Webinar Series presentation given on April 24, 2014. The presentation explains what collections are, and how and when to use them.

  16. Tips for creating Standards Group Pages

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    22 May 2014 | Teaching Materials | Contributor(s): Denise Warzel

    The Standards Portal offers a way to organize dsicussions and resources related to a set of standards. The organizing construct can be either a community interested in sharing data or using common tools, or by a particular type of standard, for example demographics or biomarkers. An example of a...

  17. NCIP Hub Dashboard Tutorial

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    15 Apr 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a short "how-to" video to familiarize users with the customizable dashboard on NCIP Hub.

  18. Quantitative Image Informatics for Cancer Research (QIICR)

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    04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

  19. Getting Started at the Standards Portal Pilot

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    27 Mar 2014 | Teaching Materials | Contributor(s): Denise Warzel, Ann Christine Catlin

    The Standards Portal Pilot is now available! (Click the link for the portal home page.)Why use the standards portal? See more information about its genesis and use cases in a study conducted for the VCDE caBIG community here. If you are participating in the Pilot, please join the...

  20. Standards Portal CRFs Complete View

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    19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin

    This DataView resource page is for the Standards Portal CRFsUse this DataView to browse,search, explore and download the complete set of columns for NCI case report form standards at the Hub. These CRFs were brought to the Hub for clarification, discussion and discovery. They were assembled by...