Some thoughts on our progress in defining and advancing nanoinformatics
06 Nov 2018 | Presentations | Contributor(s): Mark D Hoover
Nano WG presentation November 1, 2018 by Mark Hoover, NIOSH Discussion on Nano WG accomplishments, goals and future directions.
NanoInformatics Knowledge Commons Curation Team: Building the Data Dictionary to Enrich Data Curation
11 Jul 2018 | Presentations | Contributor(s): Jaleesia Amos, Yuan Tian, Mervi Heiskanen
Nano WG Presentation, May 31st, 2018 Organized storing of data using informed-decision making to determine what information should be curated, when data curation is complete, and how to identify high-quality data. Purpose of NIKC structure & curation process: tell the story of...
Overview of the NCI Cancer Research Data Commons, Genomic Data Commons (GDC), and NCI Cloud Resources
07 Jun 2018 | Presentations | Contributor(s): Tanja Davidsen, Mervi Heiskanen
Nano WG presentation, June 7, 2018 by Tanja Davidsen, NCI CBIIT The Cancer Research Data Commons (CRDC) and NCI Cloud Resources overview.
ISA-TAB-Nano-Expanded: Community-Sourced Updated Templates
22 Sep 2017 | Presentations | Contributor(s): Nancy Birkner
Nano WG Presentation September 21, 2017 by Nancy Birkner, Duke University. ISA-TAB-Nano extension project with added support for environmental, health and safety assessment of nanomaterials. Center for the Environmental Implications of Nanotechnology (CEINT) took on the leadership of...
Dissolution as a Paradigm in Regulating Nanomaterials
16 Aug 2017 | Presentations | Contributor(s): Frederick C. Klaessig
Nano WG presentation, August 10, 2017 Themes: • Dissolution as a decision criterion • Analogies to ζ-potential & VSSA • Relation to nanoform & nanoscale form • Dissolution kinetics and artifacts • ASTM particle ontology & Nanoinformatics Roadmap...
The Digital Slide Archive
13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper
Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.
NANoREG-Proposed ISA-TAB-Nano Template Expansion
13 Apr 2017 | Presentations | Contributor(s): Nancy Birkner
Nano WG presentation April 13, 2017 by Dr. Nancy Birkner, post-doctoral associate at Duke University working in conjunction with the NanoInformatics Knowledge Commons, presented her progress on reviewing and updating the ISA-TAB-Nano data exchange formats. Dr. Birkner described the evolution of...
Activities to Promote Technology Research Collaborations (APTRC) PA-17-143 Pre-Application Webinar
24 Feb 2017 | Presentations | Contributor(s): Juli Klemm, Tony Dickherber
Pre-application seminar held February 24, 2017 for FOA PA-17-143
Community Adoption & Adaptation of ISA-TAB-nano Data Sharing Templates: A brief overview, next steps at CEINT, and an open discussion of priority actions
09 Feb 2017 | Presentations | Contributor(s): Christine Ogilvie Hendren, Nancy Birkner
Nano WG meeting on February 2nd, 2017 ISA-TAB-Nano Next Steps
Life after MOOCS: Online Science Education Needs a New Revolution
03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau
ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)
Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.
06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer
ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...
14 Dec 2016 | Presentations | Contributor(s): Linda Rieswijk
Nano WG December 7, 2016 presentation by Linda Rieswijk (Maastricht University).Additional relevant links not included in the presentation:Tools to convert e.g. excel files into the enanomapper RDF format here http://ambit.sourceforge.net/enanomapper/templates/convertor.htmlCollection...
eNanoMapper Database, Search Tools and Templates
23 Nov 2016 | Presentations | Contributor(s): Nina Jeliazkova
Nano WG presentation, November 17, 2016
Providing National Cyberinfrastructure to Biologists, esp. Genomicists
02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen
National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.
An Extensible and Scalable Knowledge System Architecture for Cancer Research
06 May 2016 | Presentations | Contributor(s): Daniel Crichton
ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.
08 Feb 2016 | Presentations | Contributor(s): Michael Reich
GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...
Getting Anal Cancer Screening & Participating in Research
22 Dec 2015 | Teaching Materials
Six minute video showing interviews of three HIV positive women telling their stories of living with HIV and choosing to participate in anal cancer screening as part of a clinical research project.
The Boston Medical Center Patient Navigation Toolkit
22 Dec 2015 | Downloads
The BMC Toolkit offers case studies, tools and resources from cancer care navigation that can be applied to reduce the impact of the target disease, health disparities, and barriers to care unique to your own community. For Program Planners, Volume 1: Developing your Patient Navigation...
Beaumont Brochures and Panel Cards
30 Nov 2015 | Teaching Materials | Contributor(s): Sue Townsel
Beaumont Cancer Clinical Trials Office brochures and panel cards: is a brochure and panel card that has been translated to Spanish and Arabic to meet the needs of the communities we serve. The brochure provides information about the Beaumont Cancer Clinical Trials Office and the different...
30 Nov 2015 | Teaching Materials | Contributor(s): Diane Townsel
Beaumont’s Patient videos: is the story of five patients that have participated in clinical research or have been a part of a bio-specimen study. The videos tell the unique stories of our patients and how our Cancer Clinical Trials staff build relationships with our patients and guide them...