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  1. HUBzero: A platform for dissemination and collaboration in Computational Science and Engineering

    07 Aug 2015 | Contributor(s): Michael McLennan, Rick Kennell

    The HUBzero cyberinfrastructure lets scientific researchers work together online to develop tools. Other researchers can then access the resulting tools using an ordinary Web browser and launch simulation runs on the national Grid infrastructure, without having to download or...

  2. UCSC Biomedical Evidence Graph Demonstration

    03 Jun 2015 | Presentations | Contributor(s): Josh Stuart, ellrott

    The BMEG demonstration includes the following elements: 1) Organization of crowd-source challenges to develop best-of-breed methods including an overview of current DREAM projects, living benchmarks; 2) Enabling cloud-ready methods for mass compute with examples of recently...

  3. Seven Bridges Cancer Genomics Cloud Pilot TCGA 2015 symposium workshop presentation

    23 May 2015 | Presentations | Contributor(s): Deniz Kural

    Basic and translational cancer research creates the need to disseminate, manage, and interpret large heterogeneous datasets. The volume and complexity of the data now routinely generated by high-throughput technologies has become too costly for individual laboratories and many research...

  4. NCIP Hub QIN Workshop - March 3, 2015

    19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

    Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

  5. The World of HUBzero

    11 Feb 2015 | Presentations | Contributor(s): Michael McLennan

    This part of a demo/presentation from the Force2015 conference giving you a 9 1/2 minute overview of the HUBzero platform and its capabilities - NCIP Hub is based on the HUBzero platform.[[Youtube(p_hpwoiXvEE,300,200)]]

  6. QIN Software tools inventory summary

    20 Jan 2015 | Downloads | Contributor(s): Andrey Fedorov

    Abstract QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as...

  7. Video: Learn how TIES can help manage research resources

    16 Jan 2015 | Presentations | Contributor(s): Girish Chavan, Rebecca Crowley

    https://www.youtube.com/watch?v=EzjAo9LJ4tg  

  8. Some Thoughts on Reproducibility

    05 Dec 2014 | Presentations | Contributor(s): John Rumble

    Nano WG December 4, 2014

  9. Data, Metadata and "Data Quality" for Databases

    05 Dec 2014 | Presentations | Contributor(s): Frederick C. Klaessig, Mervi Heiskanen

    Nano WG December 4, 2014

  10. Data Reproducibility Nanotechnology Knowledge Infrastructure Data Curation

    05 Dec 2014 | Presentations | Contributor(s): Martin Fritts

    Nano WG presentation on December 4, 2014

  11. CRAVAT Introduction Video - Cancer Related Analysis of Variants

    03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  12. Overview of the National Cancer Institute (NCI) Nanotechnology Characterizaton Laboratory (NCL)

    03 Nov 2014 | Presentations | Contributor(s): Jennifer Hall Grossman

    Working in concert with the National Institute of Standards and Technology (NIST) and the U.S. Food and Drug Administration (FDA), the National Cancer Institute (NCI) established the Nanotechnology Characterization Laboratory to perform preclinical efficacy and toxicity testing of...

  13. CERR: A Computational Environment for Radiotherapy Research

    28 Oct 2014 | External Applications | Contributor(s): Joseph Deasy

    CERR (pronounced 'sir') is a software platform for developing and sharing research results in radiation therapy treatment planning.CERR is written in the widely-used Matlab language (version 7.0 or later), allowing for low-cost development of visualization and analysis tools.CERR will...

  14. Quantitative Imaging Network(QIN) BIDS Related Tools

    27 Oct 2014 | Downloads | Contributor(s): Andrey Fedorov, Thomas Casavant

    An inventory of the software tools used by the QIN sites to facilitate collaborative efforts such as sharing of analysis results and software tools.

  15. QIN Tools Inventory Summary

    15 Oct 2014 | Teaching Materials | Contributor(s): Andrey Fedorov

    QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as “QIN...

  16. caNanoLab Data Portal Presentation

    25 Sep 2014 | Presentations | Contributor(s): Sharon Gaheen

    caNanoLab is a data sharing portal designed to facilitate information sharing across the international biomedical nanotechnology research community to expedite and validate the use of nanotechnology in biomedicine. caNanoLab provides support for the annotation of nanomaterials with...

  17. Environmental Consequences of Nanotechnologies

    11 Sep 2014 | Presentations | Contributor(s): Jeffrey Steevens, Alan Kennedy, Jessica Coleman, Zach Collier, Aimee Poda, Charles Weiss, Mark Widder, Jonathan Stallings, Robert Moser

    Jeffery A Steevens, Senior ScientistAlan Kennedy, Jessica Coleman, Zach Collier, Robert Moser, Aimee Poda, Charles WeissUS Army ERDCMark Widder and MAJ Jonathan StallingsUS Army Center for Environmental Health ResearchPresentation to NCI - Nanotechnology Working Group 11 September 2014

  18. Considerations of relevance vs reliability and know vs show for CLEAR communication and how they relate to issues for nanotechnology, including the data-readiness levels

    09 Sep 2014 | Presentations | Contributor(s): Stacey L Harper, Mark D Hoover

    Presentation for the Nano WG 4.24. 2014

  19. Data Readi

    13 Aug 2014 | Teaching Materials | Contributor(s): Lisa E Friedersdorf

    Nanotechnology Signature InitiativeNanotechnology Knowledge Infrastructure (NKI):Enabling National Leadership in Sustainable DesignDraft Discussion Document: May 9, 2013

  20. Nanocuration update by Christine Hendren

    02 Jun 2014 | Presentations | Contributor(s): Christine Ogilvie Hendren

    Nanocuration update by Christine Hendren, Nano WG May 29, 2014