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  1. Joint Xena-Trinity-Cistrome-Cravat/MuPIT Collaboration

    26 Jun 2014 | Presentations | Contributor(s): Xiaole Shirley Liu, Aviv Regev, Rachel Karchin, Rebecca Crowley

    ITCR PI meeting presentation

  2. JPI Editorial: Evaluating Whole Slide Imaging: A Working Group Opportunity

    03 Nov 2014 | Publications | Contributor(s): Brandon D. Gallas

    This document is a pre-publication version of an editorial to be published in the Journal of Pathology Informatics. It outlines the goals of the organizers envisioned for the WSI working group.

  3. Keynote Presentation: Computing and Data in Precision Oncology

    05 Dec 2019 | Presentations | Contributor(s): Warren Kibbe

    Computing and Data in Precision OncologyWarren A Kibbe, Ph. D.Professor, Biostats & BioinformaticsChief Data Officer, Duke Cancer

  4. KRAS Entry Clone Collection

    16 May 2014 | Reagents | Contributor(s): Dominic Esposito

    The R3 KRAS Entry Clone Collection #1 is a set of vectors for use with the Gateway Cloning Platform (Life Technologies, Carlsbad, CA) to permit construction of KRAS expression vectors for in vitro and in vivo research. While these clones can be used for standard Gateway cloning, their utility is...

  5. LBL Expanded ICBP43 integrative genomic data

    13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

    There are six (6) datasets in this study: Reverse protein lysate array (JWGray_BCCL_RPPA_timecourse_Lapatinib_v1-1.txt)  Reverse protein lysate array readme (JWGray_BCCL_RPPA_timecourse_Lapatinib_v1-1_readme.txt) Affymetrix SNP data ( Segmented copy number data...

  6. LBL ICBP50 integrative genomic data

    13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

    From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data ( Affymetrix splice junction exon-exon data ( Affymetrix...

  7. Lessons from a red squirrel, mentors, and the pathway to success.

    12 Sep 2014 | Publications | Contributor(s): Reinhart A.F. Reithmeier

    In this article, Dr. Reithmeier reviews his personal career path starting with how a red squirrel got him interested in research, and the vital role that mentors played in his pathway to success; a pathway that taught him many lessons that he would like to share with particularly graduate...

  8. Life after MOOCS: Online Science Education Needs a New Revolution

    03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

    ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

  9. Mamomics

    28 Jul 2014 | Downloads | Contributor(s): Maggie Cam, Lalage Wakefield

    Wafergen Target Data prototype resource

  10. Materials Science Data Management Initiatives at NIST

    17 Dec 2015 | Presentations | Contributor(s): Robert J. Hanisch

    Nano WG December 17, 2015   •NIST is a national and world resource for fundamental data •Access should be easy and open –With regard to IP and privacy issues •As our nation’s standards organization… –NIST should be a leader in national and...

  11. MC-GPU at Google Code

    12 Mar 2015 | External Applications | Contributor(s): Andreu Badal

    Link to MC-GPU at Google Code

  12. Medicine & AI

    05 May 2022 | Publications | Contributor(s): Simran Joshi

  13. MetaMorpheus

    05 Oct 2018 | Tools | Contributor(s): Anthony J Cesnik, Michael Shortreed

    Bottom-up proteomics database search software with integrated posttranslational modification (PTM) discovery capability.

  14. MeV: Software for Next Generation Genomic Data Analysis

    23 Jun 2014 | Presentations | Contributor(s): John ` Quackenbush

    ITCR PI meeting presentation

  15. mitoticapp

    10 Feb 2015 | Tools | Contributor(s): Qi Gong

    mitotic figure counter

  16. Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms

    04 Apr 2016 | Publications | Contributor(s): Vincent Bernard

    Bernard V, Fleming J, Maitra A. Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms. Surgical Oncology Clinics of North America. Vol. 25 Iss 2, April 2016. PubMed PMID: 27013361 Carcinogenic progression in the pancreas arises...

  17. Molecule & Particle Differentiation Using Electrophoresis

    28 Apr 2015 | Presentations | Contributor(s): Frederick C. Klaessig, Sharon Ku

    Nano WG April 16, 2015

  18. MS275 up-regulates Fas expression through down-regulation

    13 Aug 2015 | Presentations | Contributor(s): Vincent Bernard

    Despite aggressive chemotherapy treatments, prognosis for patients with lung metastases from osteosarcoma (OS) remains poor. It is thus important to pursue new therapeutic approaches. The ability of osteosarcoma cells to form lung metastases has been inversely correlated to cell surface Fas...

  19. Multiclass cancer diagnosis using tumor gene expression signatures

    10 Nov 2014 | Downloads

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

  20. Multiparametric and Multimodality Quantitative Imaging for Evaluation of Response to Cancer Therapy

    30 Apr 2014 | Teaching Materials | Contributor(s): Eric C. Frey, Michael A. Jacobs, Martin A. Lodge, Hao Wang, Richard L. Wahl

    The overall goal of this U01 is to combine quantitative parameters from multiple modalities, in particular PET/CT, SPECT/CT and MRI, to provide a better prediction or assessment of therapeutic response. We will use different tracers in PET and SPECT and advanced MRI methods. In the project we...