JPI Editorial: Evaluating Whole Slide Imaging: A Working Group Opportunity

03 Nov 2014 | Publications | Contributor(s): Brandon D. Gallas

This document is a pre-publication version of an editorial to be published in the Journal of Pathology Informatics. It outlines the goals of the organizers envisioned for the WSI working group.

Keynote Presentation: Computing and Data in Precision Oncology

05 Dec 2019 | Presentations | Contributor(s): Warren Kibbe

Computing and Data in Precision OncologyWarren A Kibbe, Ph. D.Professor, Biostats & BioinformaticsChief Data Officer, Duke Cancer Institutewarren.kibbe@duke.edu@supercomputing#sc19#CAFCW19#ComputationalPhenomics#PrecisionOncology

KRAS Entry Clone Collection

16 May 2014 | Reagents | Contributor(s): Dominic Esposito

The R3 KRAS Entry Clone Collection #1 is a set of vectors for use with the Gateway Cloning Platform (Life Technologies, Carlsbad, CA) to permit construction of KRAS expression vectors for in vitro and in vivo research. While these clones can be used for standard Gateway cloning, their utility is...

LBL Expanded ICBP43 integrative genomic data

13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

There are six (6) datasets in this study: Reverse protein lysate array (JWGray_BCCL_RPPA_timecourse_Lapatinib_v1-1.txt)  Reverse protein lysate array readme (JWGray_BCCL_RPPA_timecourse_Lapatinib_v1-1_readme.txt) Affymetrix SNP data (icbp43_affy_snp.zip) Segmented copy number data...

LBL ICBP50 integrative genomic data

13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data (ICBP_U133a.zip) Affymetrix splice junction exon-exon data (ICBP_Junction.zip) Affymetrix...

Lessons from a red squirrel, mentors, and the pathway to success.

12 Sep 2014 | Publications | Contributor(s): Reinhart A.F. Reithmeier

In this article, Dr. Reithmeier reviews his personal career path starting with how a red squirrel got him interested in research, and the vital role that mentors played in his pathway to success; a pathway that taught him many lessons that he would like to share with particularly graduate...

Life after MOOCS: Online Science Education Needs a New Revolution

03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

Mamomics

28 Jul 2014 | Downloads | Contributor(s): Maggie Cam, Lalage Wakefield

Wafergen Target Data prototype resource

Materials Science Data Management Initiatives at NIST

17 Dec 2015 | Presentations | Contributor(s): Robert J. Hanisch

Nano WG December 17, 2015   •NIST is a national and world resource for fundamental data •Access should be easy and open –With regard to IP and privacy issues •As our nation’s standards organization… –NIST should be a leader in national and...

MC-GPU at Google Code

12 Mar 2015 | External Applications | Contributor(s): Andreu Badal

Link to MC-GPU at Google Code

Medicine & AI

05 May 2022 | Publications | Contributor(s): Simran Joshi

MetaMorpheus

05 Oct 2018 | Tools | Contributor(s): Anthony J Cesnik, Michael Shortreed

Bottom-up proteomics database search software with integrated posttranslational modification (PTM) discovery capability.

mitoticapp

10 Feb 2015 | Tools | Contributor(s): Qi Gong

mitotic figure counter

Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms

04 Apr 2016 | Publications | Contributor(s): Vincent Bernard

Bernard V, Fleming J, Maitra A. Molecular and Genetic Basis of Pancreatic Carcinogenesis: Which Concepts May Be Clinically Relevant? Pancreatic Neoplasms. Surgical Oncology Clinics of North America. Vol. 25 Iss 2, April 2016. PubMed PMID: 27013361 Carcinogenic progression in the pancreas arises...

Molecule & Particle Differentiation Using Electrophoresis

28 Apr 2015 | Presentations | Contributor(s): Frederick C. Klaessig, Sharon Ku

Nano WG April 16, 2015

MS275 up-regulates Fas expression through down-regulation

13 Aug 2015 | Presentations | Contributor(s): Vincent Bernard

Despite aggressive chemotherapy treatments, prognosis for patients with lung metastases from osteosarcoma (OS) remains poor. It is thus important to pursue new therapeutic approaches. The ability of osteosarcoma cells to form lung metastases has been inversely correlated to cell surface Fas...

Multiclass cancer diagnosis using tumor gene expression signatures

10 Nov 2014 | Downloads

Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

Multiparametric and Multimodality Quantitative Imaging for Evaluation of Response to Cancer Therapy

30 Apr 2014 | Teaching Materials | Contributor(s): Eric C. Frey, Michael A. Jacobs, Martin A. Lodge, Hao Wang, Richard L. Wahl

The overall goal of this U01 is to combine quantitative parameters from multiple modalities, in particular PET/CT, SPECT/CT and MRI, to provide a better prediction or assessment of therapeutic response. We will use different tracers in PET and SPECT and advanced MRI methods. In the project we...