Evaluating CPA as a cytotoxic agent in endometrial and ovarian carcinoma cells

10 Mar 2016 | Presentations | Contributor(s): Carolina Jannet Garcia Garcia

Evaluation of HCC Response to Systemic Therapy with Quantitative MRI

30 Apr 2014 | Teaching Materials | Contributor(s): Guido Jajmovich, Octavia Bane, Hadrien Dyvorne, Bachir Taouli

Overall objective: Develop a quantitative multiparametric protocol combining measurements of MR diffusion, perfusion and hypoxia in hepatocellular carcinoma (HCC)

Examples on Using Wikidata to Support Nanoinformatics Projects

13 Sep 2019 | Presentations | Contributor(s): Egon Willighagen

Nano WG Meeting September 12, 2019 Two years ago, a community survey resulted in a sketch of a linked data approach to nanosafety research [0]. Interoperability of linked data enables the reuse, but linking databases is not trivial. Many resources are simply not FAIR enough for reuse yet,...

Experimental Information Extraction from Nanocrystal Device Development Research Papers

24 Jun 2016 | Presentations | Contributor(s): Thaer Dieb

Nano WG weekly meeting: Dr. Thaer M. Dieb, National Institute for Material Science, Graduate School of Frontier Sciences, University of Tokyo  Seminar on development of an annotated corpus for nanocrystal device research papers and automatic information extraction framework...

Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

FAIR for NanoSafety: where do we stand?

05 Apr 2019 | Presentations | Contributor(s): Egon Willighagen

Nano WG April 4, 2019 Findable, Accessible, Interoperable, Reusable (FAIR) sharing of nanosafety data.

Gaussian Blob Texture Reference Objects

29 Dec 2015 | Downloads | Contributor(s): Larry Pierce

Gaussian Blob Objects are 128x128x128 cubic Texture Reference Image Volumes stored as 4-Byte floating point values ('real*4').  Each is a sum of 300 randomly distributed Gaussian Distributions. Two parameters are varied to alter the width of the distributions to achieve gradually...

GDC APIs and Pipelines Presentation

10 Aug 2015 | Downloads | Contributor(s): Eve R Shalley, Allison Heath

Presentation by Allison Heath for the Cloud Teams.

Geant4 - A Simulation Toolkit

20 Jun 2019 | Tools | Contributor(s): Sachin Dev

Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.

Genetic and epigenetic modifications of Sox2 contribute to the invasive phenotype of malignant gliomas

08 Mar 2016 | Publications | Contributor(s): Nahir Cortes

Alonso MM, Diez-Valle R, Manterola L, Rubio A, Liu D, Cortes-Santiago N, Urquiza L, Jauregi P, Lopez de Munain A, Sampron N, Aramburu A, Tejada-Solís S, Vicente C, Odero MD, Bandrés E, García-Foncillas J, Idoate MA, Lang FF, Fueyo J, Gomez-Manzano C. Genetic and epigenetic...

Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma (HCC)

02 Feb 2014 | Publications

Hepatocellular carcinoma (HCC) is the fifth most common cancer and the third most common cause of cancer mortality in the world. Although the association of HCC with chronic liver disease is well established, the exact etiology of HCC remains undefined. Here, we report the results of...

GenomeSpace Presentation

08 Feb 2016 | Presentations | Contributor(s): Michael Reich

GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

Getting Anal Cancer Screening & Participating in Research

22 Dec 2015 | Teaching Materials

Six minute video showing interviews of three HIV positive women telling their stories of living with HIV and choosing to participate in anal cancer screening as part of a clinical research project.

Getting Started at the Standards Portal Pilot

27 Mar 2014 | Teaching Materials | Contributor(s): Denise Warzel, Ann Christine Catlin

The Standards Portal Pilot is now available! (Click the link for the portal home page.)Why use the standards portal? See more information about its genesis and use cases in a study conducted for the VCDE caBIG community here. If you are participating in the Pilot, please join the...

Global Harmonization of Nanoinformatics: A Case Study in Convergence and Team Science

27 Nov 2019 | Presentations | Contributor(s): Frederick C. Klaessig, Christine Ogilvie Hendren

Nano WG November 14, 2019National Nanotechnology Coordination Office (NNCO) sponsored Nanoinformatics presentation followed by discussion on Nanomaterial safety data integration with eNanoMapper database and eNanoMapper Ontology...

Guidelines for Releasing Research Software

09 Dec 2014 | Teaching Materials | Contributor(s): Natasha Wright, Ishwar Chandramouliswaran, Juli Klemm, Carl McCabe, Richard Lambert, Wendy Patterson

Click on the black "view resource"button above to access the guidelines document.to encourage open software development by the nci intramural research community, these guidelines offer guidance for releasing research software source code in a free open access or open source format. this...

Handling Heavy Workloads and Automated Workflows on NCIP Hub

27 Jun 2014 | Presentations | Contributor(s): Michael McLennan

In this June 2014 NCIP Hub Webinar, we see how to use "workspaces" within the hub to access significant computational power.  The "submit" command is a gateway to many different execution venues that can be integrated into each hub.  This seminar shows how to...

Health Information National Trends Survey (HINTS) 5 Cycle 2 (2018)

02 Aug 2019 | Downloads | Contributor(s): Kelly Blake, Richard Moser

The Health Information National Trends Survey (HINTS) is a nationally representative survey that has been administered every few years by the National Cancer Institute since 2003. The HINTS target population is all adults aged 18 or older in the civilian non-institutionalized population of the...

Health Rocks Compliment for Upper Elementary and Middle School

21 Sep 2016 | Teaching Materials | Contributor(s): John Patrick Brice Jr

Written Compilation for Students in Rural Appalachian NC Middle and Elementary Schools regarding health and the environment with cancer topics integrated into curriculum *including substance abuse, nutrition, obesity, diabetes, and water safety education*

HIF-1α stabilization requires mitochondrial respiration

14 Aug 2015 | Presentations | Contributor(s): Viviana Vidal Anaya

Hypoxia inducible factors (HIFs) are oxygen sensitive transcription factors that allow adaptation to hypoxic environments by altering their metabolic programming and gene expression. HIF-1 consists of an oxygen-regulated subunit HIF-1α and a constituvely expressed subunit HIF-1β....