Skip to main content
The NCI Community Hub will be retiring in May 2024. For more information please visit the NCIHub Retirement Page:https://ncihub.cancer.gov/groups/ncihubshutdown/overview
close

Resources: All

Submit a resource

Find a resource
  1. nciphub x
  2. itcr x

  1. Life after MOOCS: Online Science Education Needs a New Revolution

    0.0 out of 5 stars 

    03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

    ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

  2. NCIP Hub Dashboard Tutorial

    0.0 out of 5 stars 

    15 Apr 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a short "how-to" video to familiarize users with the customizable dashboard on NCIP Hub.

  3. NCIP Hub QIN Workshop - March 3, 2015

    0.0 out of 5 stars 

    19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

    Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

  4. Next-Generation Clustered Heat Maps (NG-­CHM)

    0.0 out of 5 stars 

    07 Oct 2015 | Presentations | Contributor(s): Weinstein John, Bradley Broom

    Clustered Heat Maps (CHMs) have been referred to as the ubiquitous visual icons of post-genomic biology -- the most frequent type of visualization for large molecular profiling databases. However, “traditional” CHMs are static images -- a serious limitation. Accordingly, we have now...

  5. Notes from the ITCR Annual Meeting May 27-28, 2015

    0.0 out of 5 stars 

    10 Jun 2015 | Downloads | Contributor(s): Ishwar Chandramouliswaran, Juli Klemm

    Notes from the ITCR Annual Meeting May 27-28, 2015

  6. Open source diffusion MRI technology for brain cancer research

    0.0 out of 5 stars 

    07 Oct 2015 | Presentations | Contributor(s): Lauren O\'Donnell

    Using measurements of water diffusion, dMRI can give unique insights into the microstructure and cellular orientation of tissues. There is a growing awareness in the neurosurgery community that diffusion models must move beyond the current clinical standard of the diffusion tensor for better...

  7. Pathology Image Informatics Platform for visualization, analysis and management

    0.0 out of 5 stars 

    07 Oct 2015 | Presentations | Contributor(s): Metin Gurcan, Anant Madabhushi, Anne Martel

    This multi-institutional proposal seeks to expand on an existing, freely available pathology image viewer (Sedeen Image Viewer) to create a pathology informatics platform (PIIP) for managing, annotating, sharing, and quantitatively analyzing digital Pathology Imaging (DPI) data. Sedeen has become...

  8. Providing National Cyberinfrastructure to Biologists, esp. Genomicists

    0.0 out of 5 stars 

    02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen

    National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

  9. Quantitative Image Informatics for Cancer Research (QIICR)

    0.0 out of 5 stars 

    04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

  10. Resources on NCIP Hub

    0.0 out of 5 stars 

    22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

  11. Resources on NCIP Hub (2016)

    0.0 out of 5 stars 

    02 Mar 2016 | Presentations | Contributor(s): Lisa Mahoney

    This presentation is part of NCIP Hub's 2016 Webinar Series. It provides an overview of what resources are, when and why to use resources and how to upload resources to NCIP Hub.

  12. Summarization of Big Data

    0.0 out of 5 stars 

    07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  13. The Cistrome Data Collection

    0.0 out of 5 stars 

    22 Jan 2014 | Presentations

  14. The Digital Slide Archive

    0.0 out of 5 stars 

    13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper

    Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.

  15. Tools for Creation of Integrated Data Repository for Cancer Research

    0.0 out of 5 stars 

    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

  16. Tools to Analyze Morphology and Spatially Mapped Molecular Data

    0.0 out of 5 stars 

    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  17. Trinity: RNA-Seq De novo Assembly Application

    0.0 out of 5 stars 

    30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...

  18. Why Should You Care About Accessibility of Your Contributed Content?

    0.0 out of 5 stars 

    02 Jun 2014 | Teaching Materials

    Most people today can hardly conceive of life without the internet. Some have argued that no other single invention has been more revolutionary since Gutenberg's printing press in the 1400s. Now, at the click of a mouse, the world can be "at your fingertips"—that is, if you...