Standards Portal CDEs Common Data Fields
19 Mar 2014 | Downloads | Contributor(s): Denise Warzel, Sumudinie fernando, Ann Christine Catlin
This DataView is for the Common Data Fields of the Standards Portal CDEsUse this DataView to browse, search, explore and download the essential set of columns for NCI common data elements standards at the Hub. These CDEs were brought to the Hub for clarification, discussion and discovery. They...
A Semantic Web-based Quality Assurance Tool for Cancer Study Common Data Elements
16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang
A poster presentation from the caCDE-QA project (PI: Jiang)
Accelerating Nanotech Innovations Through a Safer-By-Design Approach, Safer Nanomaterials School
14 May 2019 | Presentations | Contributor(s): Philippe Sabatier
Nano WG May 9, 2019European Scientific Institute (ESI) Safer Nanomaterials School Introduction.
Activities to Promote Technology Research Collaborations (APTRC) PA-17-143 Pre-Application Webinar
24 Feb 2017 | Presentations | Contributor(s): Juli Klemm, Tony Dickherber
Pre-application seminar held February 24, 2017 for FOA PA-17-143
Advanced Development of TIES - A Clinical Text Search Engine
18 Feb 2014 | Presentations | Contributor(s): Rebecca Crowley
Archived human tissues are an essential resource for translational research. Formalin-fixed, paraffin-embedded (FFPE) tissues from cancer patients are used in a wide range of assays, including RT-PCR, SNP profiling, multiplex biomarkers, imaging biomarkers, targeted exome, whole exome, and whole...
Advances in the reliability of nanotoxicity assays
27 Feb 2020 | Presentations | Contributor(s): Elijah Petersen
Nano WG February 20, 2020Abstract: With the increasing usage of nanotechnology in consumer products, it is important to develop accurate methods to assess the potential adverse effects of engineered nanomaterials (ENMs) on humans or environmentally important organisms. However, many of these...
Adverse Events Terminology Standards, Data Elements and Case Report Forms
15 Mar 2014 | Teaching Materials | Contributor(s): Sherri de Coronado, Ann Christine Catlin, Sumudinie fernando, Denise Warzel
Standards for coding, naming and grading adverse events (AEs) in cancer clinical trials include both cancer-focused and broader systems that all result from collaboration among academic, governmental, and pharmaceutical industry clinical investigators. They are all based on the need for...
An Extensible and Scalable Knowledge System Architecture for Cancer Research
06 May 2016 | Presentations | Contributor(s): Daniel Crichton
ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.
Analysis, integration and visualization of DNA methylation sequencing data
07 Nov 2014 | Presentations | Contributor(s): Maureen Sartor
Integrative epigenomic/genomic profiling and biomarker discovery of HPV+ and HPV- squamous cancers.
ASTM update: minimun ontology proposal
01 Dec 2016 | Presentations | Contributor(s): Frederick C. Klaessig
Nano WG Meeting December 1, 2016. • Review of interac+ons between ASTM and Nanoinforma+cs Roadmaps • Status of ASTM ‘minimum ontology’ proposal • Discussion of best means of iden+fying a “neutral, core, basic, minimum” ontology that is...
Biomedical Evidence Graph
03 Oct 2014 | Presentations | Contributor(s): Josh Stuart
Brain Cancer Imaging Analytics
02 Oct 2015 | Presentations | Contributor(s): Christos Davatzikos
The transition of oncologic imaging from its “industrial era” to it is “information era” demands analytical methods that 1) extract information from this data that is clinically and biologically relevant; 2) integrate imaging, clinical, and genomic data via rigorous...
CEINT's NanoPHEAT Project : Integrating Exposure and Toxicity Data to Build Risk Forecasting Tools
16 Apr 2020 | Presentations | Contributor(s): Mark Wiesner, Jaleesia Amos
The NanoPHEAT tool (Nano Product Hazard and Exposure Assessment Tool) is built to compile dose-response curves from literature, including hundreds of papers, and calculates the estimated exposure to nanoparticles as released from real products, based on some in-house experimental values that we...
Cloud Supercomputer Aided Diagnostic Imaging Decision Support System
18 Jun 2014 | Presentations | Contributor(s): Hiro Yoshida
ITCR PI meeting presentation on project status.
Community Adoption & Adaptation of ISA-TAB-nano Data Sharing Templates: A brief overview, next steps at CEINT, and an open discussion of priority actions
09 Feb 2017 | Presentations | Contributor(s): Christine Ogilvie Hendren, Nancy Birkner
Nano WG meeting on February 2nd, 2017 ISA-TAB-Nano Next Steps
CRAVAT - Cancer-Related Analysis of Variants Toolkit
23 Jun 2015 | External Applications | Contributor(s): Rachel Karchin, Michael C Ryan
cravat is a bioinformatics pipeline : ; that performs high-throughput cancer-related analysis of variants. it : ; utilizes three applications: CHASM (Cancer-Specific Analysis of Somatic Mutations), VEST and SVN-Get. More information on these tools is available at CHASM Software.Release...
CRAVAT Introduction Video - Cancer Related Analysis of Variants
03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan
This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/). CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...
Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano
21 Jan 2016 | Presentations | Contributor(s): Richard Liam Marchese Robinson
Nano WG meeting January 21, 2016 This is an updated version of the talk originally delivered at the CompNanoTox2015 conference.  Marchese Robinson, R.; Richarz, A.N.; Cassano, A.; Cronin, M.T.D; Rallo, R. (2015): Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano. FigShare....
Data Management: The appproach in NANoREG and ProSafe
21 Apr 2016 | Presentations | Contributor(s): Sara Totaro, Hugues Crutzen
NANoREG project is working on establishing a common European approach to the regulatory testing of Manufactured Nanomaterials and ProSafe has been designed to coordinate and support the aims of EU member and associated states in their EU and international efforts regarding risk assessment,...
Data Sharing and the Electronic NanoBook (eNanobook)
20 Nov 2017 | Presentations | Contributor(s): Alexander Tropsha, Fred Prior
Sustainable research progress in many if not all scientific disciplines critically depends on the existence of robust specialized databases that integrate and structure all available experimental information in the respective fields. The need for such reference databases is especially critical...