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  1. The Digital Slide Archive

    13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper

    Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.

  2. The history of chemical information and the materials of the future

    25 Apr 2019 | Presentations | Contributor(s): Evan Hepler-Smith

    Techniques, technologies, cultures, and infrastructures of information management played a central role in the development of the modern chemical sciences and the global chemicals industry since the late 19th century. Chemical databases and analytical techniques that privileged abstract,...

  3. The impact of engineered nanomaterials on aquatic species: ISA-TAB compatible dataset mined from literature (2007-2016)

    13 Jun 2017 | Presentations | Contributor(s): Anastasios Papadiamantis

    Nano WG presentation, June 8, 2017Primary scope of the project was to: Model the toxicity of engineered nanomaterials (ENMs) at multiple levels and design and create a database (DB) containing extracted peer-reviewed published toxicity dataAnalyse the extracted data and identify...

  4. The Materials Genome Initiative and the Materials Data Infrastructure

    31 Mar 2020 | Presentations | Contributor(s): James Warren

    Presentation on current efforts to build out the materials data infrastructure in support of the US Materials Genome Initiative and discussion on  incentives that need to be in place to realize program goals.

  5. The NANoREG Toolbox for the safety assessment of nanomaterials

    16 Jan 2018 | Presentations | Contributor(s): Paula Jantunen

    Presentation for the Nano WG on January 11, 2018 by Paula Jantunen,  The European Commission’s science and knowledge service Joint Research Centre NANOoREG Toolbox supports the framework by identifying & inventorying tools for the different steps and options of...

  6. The Open Scholarship Initiative (OSI)

    17 Dec 2015 | Presentations | Contributor(s): Glenn Hampson

    Nano WG meeting November 19, 2015. : "What should the future of scholarly publishing look like? How about open access? Who should decide? Can journals become more affordable and accessible? Will journals continue to serve as the primary means of communicating research? Can institutional...

  7. Tools for Creation of Integrated Data Repository for Cancer Research

    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

  8. Tools to Analyze Morphology and Spatially Mapped Molecular Data

    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  9. Transitioning to Predictive Analysis for Nanoparticle Biocorona Studies

    14 May 2019 | Presentations | Contributor(s): Korin Wheeler

    Nano WG April 18, 2019: Proteins adsorbed to nanomaterials in a biological environment mediate cellular recognition, uptake, and toxicity of nanomaterials. Here, Dr. Korin Wheeler presents the development of experimental methods to characterize this population of proteins (also...

  10. Trinity: RNA-Seq De novo Assembly Application

    30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...

  11. US-EU Nanoinformatics Roadmap Update

    27 Jul 2016 | Presentations | Contributor(s): Frederick C. Klaessig

    US-EU Nanoinformatics Roadmap Update for the Nano WG on July 28, 2016