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  1. Dissolution as a Paradigm in Regulating Nanomaterials

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    16 Aug 2017 | Presentations | Contributor(s): Frederick C. Klaessig

    Nano WG presentation, August 10, 2017 Themes: • Dissolution as a decision criterion • Analogies to ζ-potential & VSSA • Relation to nanoform & nanoscale form • Dissolution kinetics and artifacts • ASTM particle ontology & Nanoinformatics Roadmap...

  2. eNanoMapper Database, Search Tools and Templates

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    23 Nov 2016 | Presentations | Contributor(s): Nina Jeliazkova

    Nano WG presentation, November 17, 2016

  3. eNanoMapper Ontology

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    14 Dec 2016 | Presentations | Contributor(s): Linda Rieswijk

    Nano WG December 7, 2016 presentation by Linda Rieswijk (Maastricht University).Additional relevant links not included in the presentation:Tools to convert e.g. excel files into the enanomapper RDF format here http://ambit.sourceforge.net/enanomapper/templates/convertor.htmlCollection...

  4. Environmental Consequences of Nanotechnologies

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    11 Sep 2014 | Presentations | Contributor(s): Jeffrey Steevens, Alan Kennedy, Jessica Coleman, Zach Collier, Aimee Poda, Charles Weiss, Mark Widder, Jonathan Stallings, Robert Moser

    Jeffery A Steevens, Senior ScientistAlan Kennedy, Jessica Coleman, Zach Collier, Robert Moser, Aimee Poda, Charles WeissUS Army ERDCMark Widder and MAJ Jonathan StallingsUS Army Center for Environmental Health ResearchPresentation to NCI - Nanotechnology Working Group 11 September 2014

  5. Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

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    06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

    ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

  6. GenomeSpace Presentation

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    08 Feb 2016 | Presentations | Contributor(s): Michael Reich

    GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

  7. HUBzero: A platform for dissemination and collaboration in Computational Science and Engineering

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    07 Aug 2015 | Publications | Contributor(s): Michael McLennan, Rick Kennell

    The HUBzero cyberinfrastructure lets scientific researchers work together online to develop tools. Other researchers can then access the resulting tools using an ordinary Web browser and launch simulation runs on the national Grid infrastructure, without having to download or...

  8. HUBzero: A Web-based Platform for research, Education and Scientific Collaboration

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    11 Sep 2013 | Presentations | Contributor(s): Michael McLennan

    Imagine an app store for scientists, engineers, and educators filled with simulation and modeling tools — not simple Java applets, but real research codes that tackle difficult problems and may require substantial computing power drawn from the Cloud. Imagine a new way of publishing...

  9. Informatics to enable Routine Personalized Cancer Therapy (IPCT)

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    18 Feb 2014 | Presentations | Contributor(s): Elmer V. Bernstam, Funda Meric-Bernstam

  10. Informatics Tools for High-throughput Analysis of Cancer Mutations

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    15 Jan 2014 | Presentations | Contributor(s): Michael C Ryan, Rachel Karchin

  11. Innovative Nanoinformatics models and tools: towards a Solid, verified and Integrated Approach to Predictive (eco)Toxicology (NanoSolveIT)

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    04 Feb 2019 | Presentations | Contributor(s): Antreas Afantitis

    Nano WG January 17, 2019NanoSolveIT (a new H2020 nanoinformatics project) aspires to introduce a ground-breaking in silico Integrated Approach to Testing and Assessment (IATA) for the environmental health and safety of Nanomaterials (NM), implemented through a decision support system packaged...

  12. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

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    05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  13. ISA-TAB-Nano 1.3 release review

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    09 Mar 2020 | Presentations | Contributor(s): Mervi Heiskanen, Mervi Anneli Heiskanen

    Nano WG January 30th, 2020Review of the new 1.3 release with the Nano WG

  14. ISA-TAB-Nano-Expanded: Community-Sourced Updated Templates

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    22 Sep 2017 | Presentations | Contributor(s): Nancy Birkner

    Nano WG Presentation September 21, 2017 by Nancy Birkner, Duke University. ISA-TAB-Nano extension project with added support for environmental, health and safety assessment of nanomaterials. Center for the Environmental Implications of Nanotechnology (CEINT) took on the leadership of...

  15. ITCR Monthly Teleconference September 4, 2015

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    07 Oct 2015 | Presentations | Contributor(s): Juli Klemm

     

  16. ITCR PI Meeting June 2014 Presentations

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    23 Jun 2014 | Series

    Informatics Technology for Cancer Research (ITCR) Initiative held its Annual PI Meeting on June 12-13, 2014 in Rockville, MD. This series contains the presentations given at the meeting.

  17. Jaqpot - An open-source web platform for creating, using, testing and sharing predictive models in nano-informatics

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    20 Jun 2019 | Presentations | Contributor(s): Haralambos Sarimveis

    Nano WG June 20, 2019Computational models that predict physicochemical properties, biokinetics or adverse biological effects of Engineered Nanomaterials (ENMs) are becoming increasingly important to support risk assessment and safety-by-design. This is primarily due to cost-saving and...

  18. Life after MOOCS: Online Science Education Needs a New Revolution

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    03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

    ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

  19. nano-Ag: PBTK Models, Vblood & NIOSH

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    04 Feb 2019 | Presentations | Contributor(s): Frederick C. Klaessig, Mervi Heiskanen

    Nano WG: January 31, 2019Nanoinformatics and computational models1.Examine a nano-Ag0 computational model used in a regulatory context2.SCCS has a nano-silver opinion3.NIOSH time period overlaps with the nanoinformatics roadmap4.NIOSH a case study for roadmap’s...

  20. Nanocuration update by Christine Hendren

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    02 Jun 2014 | Presentations | Contributor(s): Christine Ogilvie Hendren

    Nanocuration update by Christine Hendren, Nano WG May 29, 2014