Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

05 Feb 2015 | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

Jaqpot - An open-source web platform for creating, using, testing and sharing predictive models in nano-informatics

20 Jun 2019 | Contributor(s): Haralambos Sarimveis

Nano WG June 20, 2019Computational models that predict physicochemical properties, biokinetics or adverse biological effects of Engineered Nanomaterials (ENMs) are becoming increasingly important to support risk assessment and safety-by-design. This is primarily due to cost-saving and...

Multiclass cancer diagnosis using tumor gene expression signatures

10 Nov 2014

Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

NANOANALYTICS OF EXTRACELLULAR VESICLES – Standards for isolation, characterization and reporting

26 May 2017 | Presentations | Contributor(s): Shivani Sharma

Nano WG presentation on May 25, 2017. Presentation by Dr.  Shivani Sharma, Associate Director of the Nano Pico Characterization Lab, UCLA. Nanoscale characterization of exosomes and their use disease biomarkers and drug delivery agents

NanoInformatics Knowledge Commons Curation Team: Building the Data Dictionary to Enrich Data Curation

11 Jul 2018 | Presentations | Contributor(s): Jaleesia Amos, Yuan Tian, Mervi Heiskanen

Nano WG Presentation, May 31st, 2018 Organized storing of data using informed-decision making to determine what information should be curated, when data curation is complete, and how to identify high-quality data. Purpose of NIKC structure & curation process: tell the story of...

NCIP Hub QIN Workshop - March 3, 2015

19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

Overview on HUBzero - Building Scientific Communities Online

03 Sep 2013 | Teaching Materials | Contributor(s): Michael McLennan

This is a white paper/publication on the HUB and how one can build online communities using the HUBzero platform. See the tab on supporting documents for a video presentation.

Overview: The HUBzero Platform for Scientific Collaboration

18 Dec 2013 | Presentations | Contributor(s): Michael McLennan

This web site was created using a collaborative infrastructure called HUBzero, developed by Purdue University. HUBzero is the basis of nanoHUB.org and more than 50 other sites covering a wide range of scientific disciplines, including bio-fuels, microelectromechanical systems, cancer research,...

QIBA Status

21 Apr 2014 | Presentations | Contributor(s): Daniel Sullivan, Vyshak Chandra

Status and potential for further collaboration with RSNA QIBA

QIN HUBzero update

28 Oct 2013 | Teaching Materials | Contributor(s): Jayashree Kalpathy-Cramer

presentation for the QIN EC meeting 10/21/2013

QIN Tools Inventory Summary

15 Oct 2014 | Teaching Materials | Contributor(s): Andrey Fedorov

QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as “QIN...

Quantitative Image Informatics for Cancer Research (QIICR)

04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

Quantitative Imaging Network (QIN) in China

18 Apr 2014 | Presentations | Contributor(s): Yan Kang

A presentation on challenges & opportunities for QIN in China

Quantitative Imaging Network(QIN) BIDS Related Tools

27 Oct 2014 | Downloads | Contributor(s): Andrey Fedorov, Thomas Casavant

An inventory of the software tools used by the QIN sites to facilitate collaborative efforts such as sharing of analysis results and software tools.

Slicer Update

21 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

Status of the Slicer Informatics (U24): Potential for WG Interactions

Summary of the 2015 Epigenetic Engineering for Cancer Workshops

22 Dec 2015 | Publications | Contributor(s): Tony Dickherber

This document provides a general summary of the 2 virtual workshops held in Fall of 2015 to explore the suitability of epigenetic engineering tools to specifically modify epigenetic loci to study and/or treat cancer.

TATA Memorial Center

18 Apr 2014 | Presentations | Contributor(s): Meenakshi Thakur

The history of chemical information and the materials of the future

25 Apr 2019 | Presentations | Contributor(s): Evan Hepler-Smith

Techniques, technologies, cultures, and infrastructures of information management played a central role in the development of the modern chemical sciences and the global chemicals industry since the late 19th century. Chemical databases and analytical techniques that privileged abstract,...