Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

FAIR for NanoSafety: where do we stand?

05 Apr 2019 | Presentations | Contributor(s): Egon Willighagen

Nano WG April 4, 2019 Findable, Accessible, Interoperable, Reusable (FAIR) sharing of nanosafety data.

GenomeSpace Presentation

08 Feb 2016 | Presentations | Contributor(s): Michael Reich

GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

Getting Anal Cancer Screening & Participating in Research

22 Dec 2015 | Teaching Materials

Six minute video showing interviews of three HIV positive women telling their stories of living with HIV and choosing to participate in anal cancer screening as part of a clinical research project.

Global Harmonization of Nanoinformatics: A Case Study in Convergence and Team Science

27 Nov 2019 | Presentations | Contributor(s): Frederick C. Klaessig, Christine Ogilvie Hendren

Nano WG November 14, 2019National Nanotechnology Coordination Office (NNCO) sponsored Nanoinformatics presentation followed by discussion on Nanomaterial safety data integration with eNanoMapper database and eNanoMapper Ontology...

Hunting for Opportunities: Nano-Enabled Drug Delivery to Treat Cancers

26 May 2016 | Presentations | Contributor(s): Alan Porter, Mervi Heiskanen

 Within the scope of ongoing nano informatics by our Georgia Tech group, we have analyzed Nano-Enabled Drug Delivery (NEDD) research publication and patent activity.  Here, I report on work led by Jing Ma exploring A) which nano components are helping deliver which B) drugs, to treat...

Improving emerging technologies content on Wikipedia, or, what to do when someone is wrong on the Internet

07 Dec 2018 | Presentations | Contributor(s): John P. Sadowski

Nano WG December 6, 2018As one of the first places many people look up information on health and safety, including with emerging technologies like nanotechnology, it is important for Wikipedia to contain information that is complete, up to date, and free of errors.  Since 2012, NIOSH has...

InChl and Nanoparticles

21 Apr 2016 | Presentations | Contributor(s): Steve Heller

The InChI Trust is a nonprofit charity which works to develop and promote the use of the IUPAC InChI open-source chemical structure representation algorithm. The InChI with its associated InChIKey was developed as a non-proprietary international standard to represent chemical structures and has...

Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

ITCR PI Meeting June 2014 Presentations

23 Jun 2014 | Series

Informatics Technology for Cancer Research (ITCR) Initiative held its Annual PI Meeting on June 12-13, 2014 in Rockville, MD. This series contains the presentations given at the meeting.

Jaqpot - An open-source web platform for creating, using, testing and sharing predictive models in nano-informatics

20 Jun 2019 | Presentations | Contributor(s): Haralambos Sarimveis

Nano WG June 20, 2019Computational models that predict physicochemical properties, biokinetics or adverse biological effects of Engineered Nanomaterials (ENMs) are becoming increasingly important to support risk assessment and safety-by-design. This is primarily due to cost-saving and...

Life after MOOCS: Online Science Education Needs a New Revolution

03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

Materials Science Data Management Initiatives at NIST

17 Dec 2015 | Presentations | Contributor(s): Robert J. Hanisch

Nano WG December 17, 2015   •NIST is a national and world resource for fundamental data •Access should be easy and open –With regard to IP and privacy issues •As our nation’s standards organization… –NIST should be a leader in national and...

Molecule & Particle Differentiation Using Electrophoresis

28 Apr 2015 | Presentations | Contributor(s): Frederick C. Klaessig, Sharon Ku

Nano WG April 16, 2015

Nano a Nature Research Solution

20 Apr 2018 | Presentations | Contributor(s): Prathik Roy, Mervi Heiskanen

Nano.nature.com known as Nano is a non-journal type product under the Nature Research portfolio. It aims to provide highly indexed and structured information related to nanomaterials derived from peer-reviewed journals. These include composition, synthesis, properties, characterization methods...

Nano WG: Nanoinformatics Roadmap 2020 Update

03 Nov 2016 | Presentations | Contributor(s): Andrea Haas, Frederick C. Klaessig

Nano WG weekly meeting November 3, 2016.Update on the Nanoinformatics 2020 Roadmap Activities by Andrea Haas and Fred Klaessig.