"DICOM 301" - Enhanced Multi-frame and Quantitation:

04 Sep 2014 | Presentations | Contributor(s): David Clunie

 In-depth presentation on the Digital Imaging and Communications in Medicine StandardA one-hour  presentation of DICOM presented by Dr. David Clunie for the members of DICOM Working Group 30, Small Animal Imaging. 

2014 QIN Face to Face Meeting

18 Apr 2014 | Workshops | Contributor(s): Jayashree Kalpathy-Cramer, Laurence Clarke

The Quantitative Imaging Network (QIN) grows from the NCI program announcement "Quantitative Imaging for Evaluation of Responses to Cancer Therapies". The network is designed to promote research and development of quantitative imaging methods for the measurement of tumor response to therapies in...

A Semantic Web-based Quality Assurance Tool for Cancer Study Common Data Elements

16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

A poster presentation from the caCDE-QA project (PI: Jiang)  

Activities to Promote Technology Research Collaborations (APTRC) PA-17-143 Pre-Application Webinar

24 Feb 2017 | Presentations | Contributor(s): Juli Klemm, Tony Dickherber

Pre-application seminar held February 24, 2017 for FOA PA-17-143 

An Extensible and Scalable Knowledge System Architecture for Cancer Research

06 May 2016 | Presentations | Contributor(s): Daniel Crichton

ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.  

Baylor Residual breast cancer

13 Nov 2014 | Downloads | Contributor(s): Creighton C, Lewis M, Chang J, Jonathan Bistline

Residual breast cancers after conventional therapy display mesenchymal as tumor-initiating features.  There are four (4) files included in this study: Sample Annotation (combined_sample_annotation.txt) Gene expression data from CD44+/CD24- cells sorted by flow cytometry (GSE7513.gct) Human...

Breast Cancer Crossword

20 Nov 2015 | Teaching Materials | Contributor(s): Katelyn Schifano

This crossword is designed for use in social media as well as patient waiting areas.

CRAVAT - Cancer-Related Analysis of Variants Toolkit

23 Jun 2015 | External Applications | Contributor(s): Rachel Karchin, Michael C Ryan

cravat is a bioinformatics pipeline : ; that performs high-throughput cancer-related analysis of variants. it : ; utilizes three applications: CHASM (Cancer-Specific Analysis of Somatic Mutations), VEST and SVN-Get. More information on these tools is available at CHASM Software.Release...

CRAVAT Introduction Video - Cancer Related Analysis of Variants

03 Dec 2014 | Teaching Materials | Contributor(s): Michael C Ryan

This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

Data Acquisition Working Group

21 Apr 2014 | Presentations | Contributor(s): Tom Chenevert, Paul Kinahan

DA-WG Update on PET-CT and DWI MRI

Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

GenomeSpace Presentation

08 Feb 2016 | Presentations | Contributor(s): Michael Reich

GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...