Providing National Cyberinfrastructure to Biologists, esp. Genomicists

02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen

National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

QIBA Status

21 Apr 2014 | Presentations | Contributor(s): Daniel Sullivan, Vyshak Chandra

Status and potential for further collaboration with RSNA QIBA

QIN HUBzero update

28 Oct 2013 | Teaching Materials | Contributor(s): Jayashree Kalpathy-Cramer

presentation for the QIN EC meeting 10/21/2013

QIN Tools Inventory Summary

15 Oct 2014 | Teaching Materials | Contributor(s): Andrey Fedorov

QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as “QIN...

Quantitative Image Informatics for Cancer Research (QIICR)

04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

Quantitative Image Informatics for Cancer Research (QIICR)

04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

Quantitative Imaging Network (QIN) in China

18 Apr 2014 | Presentations | Contributor(s): Yan Kang

A presentation on challenges & opportunities for QIN in China

Quantitative Imaging Network(QIN) BIDS Related Tools

27 Oct 2014 | Downloads | Contributor(s): Andrey Fedorov, Thomas Casavant

An inventory of the software tools used by the QIN sites to facilitate collaborative efforts such as sharing of analysis results and software tools.

Slicer Update

21 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

Status of the Slicer Informatics (U24): Potential for WG Interactions

TATA Memorial Center

18 Apr 2014 | Presentations | Contributor(s): Meenakshi Thakur

The Digital Slide Archive

13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper

Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.

The Quantitative Imaging Network Meeting Introduction

18 Apr 2014 | Presentations | Contributor(s): Robert J.Nordstrom, Larry Clark, Pushpa Tandon, Yantian Zhang, Huiming Zhang, Lori Henderson, Lalitha Shankar, Keyvan Farahani, George redmond, James Deye, Jacek Capala, John Freyman, Justin Kirby

Introductory remarks from the meeting sponsors.

Tools for Creation of Integrated Data Repository for Cancer Research

16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

Tools to Analyze Morphology and Spatially Mapped Molecular Data

03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

Translational Cancer Imaging

18 Apr 2014 | Presentations | Contributor(s): Tony Ng, David Hawkes, Shonit Punwani

Trinity: RNA-Seq De novo Assembly Application

30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

 Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...