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  1. Some thoughts on our progress in defining and advancing nanoinformatics

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    01 Aug 2019 | Contributor(s): Mark D Hoover

    Nano WG Meeting November 1, 2018Discussion on Nano WG accomplishments and future directions.

  2. Some Thoughts on Reproducibility

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    05 Dec 2014 | Presentations | Contributor(s): John Rumble

    Nano WG December 4, 2014

  3. Summarization of Big Data

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    07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  4. Talking Science: Designing and Delivering Successful Oral Presentations

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    18 Sep 2014 | Downloads | Contributor(s): Shawn Mullen

  5. The Cistrome Data Collection

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    22 Jan 2014 | Presentations

  6. The Digital Slide Archive

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    13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper

    Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.

  7. Tools for Creation of Integrated Data Repository for Cancer Research

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    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

  8. Tools to Analyze Morphology and Spatially Mapped Molecular Data

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    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  9. Transitioning to Predictive Analysis for Nanoparticle Biocorona Studies

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    14 May 2019 | Presentations | Contributor(s): Korin Wheeler

    Nano WG April 18, 2019: Proteins adsorbed to nanomaterials in a biological environment mediate cellular recognition, uptake, and toxicity of nanomaterials. Here, Dr. Korin Wheeler presents the development of experimental methods to characterize this population of proteins (also...

  10. Translational Cancer Imaging

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    18 Apr 2014 | Presentations | Contributor(s): Tony Ng, David Hawkes, Shonit Punwani

  11. Trinity: RNA-Seq De novo Assembly Application

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    30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...

  12. UCSC Biomedical Evidence Graph Demonstration

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    03 Jun 2015 | Presentations | Contributor(s): Josh Stuart, ellrott

    The BMEG demonstration includes the following elements: 1) Organization of crowd-source challenges to develop best-of-breed methods including an overview of current DREAM projects, living benchmarks; 2) Enabling cloud-ready methods for mass compute with examples of recently...

  13. Video: Learn how TIES can help manage research resources

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    16 Jan 2015 | Presentations | Contributor(s): Girish Chavan, Rebecca Crowley

    https://www.youtube.com/watch?v=EzjAo9LJ4tg