Instructional YouTube AltAnalyze Videos
13 Oct 2016 | Contributor(s): Nathan Salomonis
Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm:https://www.youtube.com/watch?v=Jylu-V7FmpY Using AltAnalyze to process pre-computed bulk and single-cell gene expression...
Active Learning: A Toolkit for Teachers
11 Oct 2016 | Teaching Materials | Contributor(s): Jenna Schiffelbein
This toolkit is intended to help K-12 teachers incorporate physical activity into their classrooms to promote healthy exercise behaviors with youth. It was developed in partnership between the Dartmouth-Hitchcock Norris Cotton Cancer Center, the State of Vermont, and the State of New Hampshire,...
Human Disease Ontology
21 Sep 2016 | External Applications | Contributor(s): Lynn Schriml
The Disease Ontology has been developed as a standardized ontology for human disease, since 2003, with the purpose of providing the biomedical community with manual curated, consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related...
Health Rocks Compliment for Upper Elementary and Middle School
21 Sep 2016 | Teaching Materials | Contributor(s): John Patrick Brice Jr
Written Compilation for Students in Rural Appalachian NC Middle and Elementary Schools regarding health and the environment with cancer topics integrated into curriculum *including substance abuse, nutrition, obesity, diabetes, and water safety education*
NCIP Hub Account Creation Guide
20 Sep 2016 | Presentations | Contributor(s): Joanthan Kurian
This presentation walks you through the NCIP Hub account creation process step by step.
Providing National Cyberinfrastructure to Biologists, esp. Genomicists
02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen
National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.
caNanoLab Data Curation Tips
23 Aug 2016 | Presentations | Contributor(s): Sharon Gaheen
This presentation includes tips for investigators submitting data to caNanoLab.
US-EU Nanoinformatics Roadmap Update
27 Jul 2016 | Presentations | Contributor(s): Frederick C. Klaessig
US-EU Nanoinformatics Roadmap Update for the Nano WG on July 28, 2016
Cancer Genomics, Open Science and PMI: FAIR at NCI
21 Jul 2016 | Presentations | Contributor(s): Warren Kibbe
Presentation to the NLM Informatics Fellows on July 8th, 2016 highlighting cancer community activities in data science, open science, data sharing, and cancer genomics.
NCI Consortia and Networks
28 Jun 2016 | Downloads | Contributor(s): Tony Dickherber
The attached spreadsheet contains a listing of all NCI-sponsored consortia and networks that might be leveraged or otherwise help drive prioritization of collaboration opportunities between IMAT and ITCR-supported investigators.
Complete Active IMAT Project listing
28 Jun 2016 | Downloads | Contributor(s): Tony Dickherber, Mervi Heiskanen
This spreadsheet contains a comprehensive list of all active projects supported by the NCI IMAT program, including grant type, project number, PI name, project start and end dates, project title and short description of the project.
Experimental Information Extraction from Nanocrystal Device Development Research Papers
24 Jun 2016 | Presentations | Contributor(s): Thaer Dieb
Nano WG weekly meeting: Dr. Thaer M. Dieb, National Institute for Material Science, Graduate School of Frontier Sciences, University of Tokyo Seminar on development of an annotated corpus for nanocrystal device research papers and automatic information extraction framework...
Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers
17 Jun 2016 | Presentations | Contributor(s): Julio Facelli
Nano WG June 16, 2016 Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers by Julio Facelli
Nanoinformatics: research and education
17 Jun 2016 | Presentations | Contributor(s): Victor Maojo
Nano WG June 2, 2016. Text mining of nanotoxicity literature (Victor Maojo)
IFNγ has variable effects on expression of MHC Class I and ICAM-1 in pediatric cancers which alter sensitivity to NK cell mediated lysis
01 Jun 2016 | Downloads | Contributor(s): Arianexys Aquino-Lopez, Vladimir Senyukov, Gabrielle Romain, Navin Varadarajan, Dean A. Lee
Interferon-γ (IFNγ), a cytokine secreted by effector lymphocytes upon activation, is known to cause upregulation of MHC class I in tumor cells, which has been associated with natural killer (NK) cell inhibition. NK cells are very heterogeneous with respect to receptor expression and...
Hunting for Opportunities: Nano-Enabled Drug Delivery to Treat Cancers
26 May 2016 | Presentations | Contributor(s): Alan Porter, Mervi Heiskanen
Within the scope of ongoing nano informatics by our Georgia Tech group, we have analyzed Nano-Enabled Drug Delivery (NEDD) research publication and patent activity. Here, I report on work led by Jing Ma exploring A) which nano components are helping deliver which B) drugs, to treat...
An Extensible and Scalable Knowledge System Architecture for Cancer Research
06 May 2016 | Presentations | Contributor(s): Daniel Crichton
ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.
Integrative Cancer Biology Program Datasets
26 Apr 2016 | Series | Contributor(s): Jonathan Bistline, Michael Reich
The NCI-ICBP promotes an integrative/systems approach to the study of cancer biology. The Program encourages scientists to study cancer as a complex biological system. Information gained from these studies are used to build reliable and testable predictive computation models of cancer processes...
Data Management: The appproach in NANoREG and ProSafe
21 Apr 2016 | Presentations | Contributor(s): Sara Totaro, Hugues Crutzen
NANoREG project is working on establishing a common European approach to the regulatory testing of Manufactured Nanomaterials and ProSafe has been designed to coordinate and support the aims of EU member and associated states in their EU and international efforts regarding risk assessment,...
InChl and Nanoparticles
21 Apr 2016 | Presentations | Contributor(s): Steve Heller
The InChI Trust is a nonprofit charity which works to develop and promote the use of the IUPAC InChI open-source chemical structure representation algorithm. The InChI with its associated InChIKey was developed as a non-proprietary international standard to represent chemical structures and has...