ITCR 2016 Annual Meeting
Notes are available here
Posters are available here
Participant List is available here (ITCR Group Members Only)
Day One
Welcome: Juli Klemm and Aviv Regev
Keynote Corrie Painter: Empowering Patients to Drive Biomedical Research
Genomics Session I Chair: Joshua Stuart
Martin Morgan Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
Jingchun Zhu Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Xena
Jill Mesirov Gene Pattern Notebooks for Cancer Research
Trey Ideker NDEx – the Network Data Exchange, a Network Commons for Biologists
Imaging Session I Chair: Rebecca Jacobson
Lee Cooper, David Gutman Advanced Development of an Open Source Platform for Web-Based Integrative Digital Image Analysis in Cancer
Jayashree Kalpathy-Cramer Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
Andriy Fedorov Quantitative Image Informatics for Cancer Research (QIICR)
Christos Davatzikos Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
ITCR Training and Outreach Working Group Lunch Meeting
Lightning Talks for New Groups
Xiao Xinshu Informatic Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
Chakra Chennubhotla Srinivas Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
Terry Meehan The PDX Integrator- Re-purposing KOMP2 informatics to Widely Disseminate Data from Patient Derived Xenografts
Daniel Marcus Integrative Imaging Informatics for Cancer Research
Hua Xu Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
Timothy Griffin A Galaxy‐Based Multi‐Omic Informatics Hub for Cancer Researchers
Genomics Session II Chair: Jill Mesirov
Brian Haas Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
Alexander Krasnitz Computational Framework for Single – Cell Genomics of Tumors
Xiaole Shirley Liu Developing Informatics Technologies to Model Cancer Gene Regulation
Technical Working Group Demonstration Projects Led by Jayashree Kalpathy-Cramer and Tahsin Kurc
Clinical Session Chair: Aviv Regev
Guoqian Jiang caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
Rebecca Jacobson: Advanced Development of TIES – Enhancing Access to Tissue for Cancer Research
Elmer Bernstam and Funda Meric-Bernstam Informatics to enable routine personalized cancer therapy
Keynote Eli Van Allen: Clinical interpretation of the cancer genome for precision oncology
Poster Session
Day Two
Opportunities for IMAT – ITCR Collaboration Tony Dickherber David Hill
Genomics Session III Chair:Trey Ideker
Rachel Karchin Informatics Tools for High-¬throughput Analysis of Cancer Mutations
Bobbie-Jo Webb-Robertson Interactive Informatics Resource for Research-Driven Cancer Proteomics
Yaoyu Wang Me V: Software for Next Generation Genomic Data Analysis
Jingshan Huang Omni Search – A Semantic Search Tool for Discovering microRNAs Critical Roles in Human Cancer
Imaging Session II Chair: Xiaole Shirley Liu
Gordon Harris Extensible Open-‐Source Zero-¬‐Footprint Web Viewer for Oncologic Imaging Research
Joel Saltz Tools to Analyze Morphology and Spatially Mapped Molecular Data
Kun Huang Informatics Links Between Histological Features and Genetics in Cancer
Anant Madabhushi Pathology Image Informatics Platform for Visualization, Analysis and Management
ITCR Technical Working Group Lunch Meeting
Genomics Session IV Chair: Brian Haas
Benjamin Berman Software Tools for Regulatory Analysis of Large Cancer Methylome Datasets
Maureen Sartor Integrative Epigenomic / Genomic Profiling and Biomarker Discovery in HPV+ and HPV-
John Weinstein and Bradley Broom Next ‐ Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
Big Data and EMR Session Chair: Rachel Karchin
Joshua Stuart and Kyle Ellrot: ESCE: Discovering Molecular Processes
Hong Yu EMR Adverse Drug Event Detection for Pharmacovigilance
Guergana Savova: Cancer Deep Phenotype Extraction from Electronic Medical Records
Imaging Session III Chair: Robert Majovski
Hugo Aerts Quantitative Radiomics System Decoding the Tumor Phenotype
Lauren O’Donnell Open Source Diffusion MRI Technology for Brain Cancer Research
Discussion of Collaboration and Integration Opportunities: Led by Joel Saltz and Jill Mesirov
Closing Remarks: Juli Klemm and Aviv Regev