Hello Qi,

Thank you. I was about to ask for it, and you sent it already.

I tried the CUM-1.ndpi WSI with the ‘dapsi’ file you sent with the last email. Now it looks like  the ExtratROIs is successfully executed; there are five  tif images generated in folder Temporary_Task_Images. However, when I select the Viewing mode to ‘Digital’ and press ‘Start The Test’ a Matlab application error pops up saying ‘File zooming_allowed.bmp  does not exist’.

In my system the file ‘zooming_allowed.bmp’ is located at ‘C:\Program Files\eedap4p0\application\gui_graphics’.  How and where can I provide  this link?

Best regards
Prarthana

From: Gong, Qi * 
Sent: Friday, April 21, 2017 2:51 PM
To: 'Shrestha, Prarthana'
Cc: Gallas, Brandon D.; Gavrielides, Marios A; Abels, Esther; Kornmann, Liselotte; Nelis, Mischa
Subject: RE: eeDAP

Hello Prarthana,

Thank you for testing our eeDAP software. We would like to share with you some sample WSI images. Could you please provide a Cloud address, so we can upload the file (about 3.4 GB)? Unfortunately, we aren't able to use google drive or Dropbox within the office. 

I've also generated a sample input file (https://github.com/DIDSR/eeDAP/blob/master/src/sample_inputfiles/sample_input_ndpi.dapsi)[LINK] for image CMU-1.ndpi, which you can download from  http://openslide.cs.cmu.edu/download/openslide-testdata/Hamamatsu/. You need to edit the following line to the CMU-1.ndpi saving path.
"wsi_slot_1       = C:\000_whole_slides\CMU-1.ndpi"

Please let us know if you have any questions or comments. Thank you.

Best Regards,
Qi


From: Shrestha, Prarthana 
Sent: Friday, April 21, 2017 11:01 AM
To: Gallas, Brandon D.
Cc: Gavrielides, Marios A; Gong, Qi *; Abels, Esther; Kornmann, Liselotte; Nelis, Mischa
Subject: eeDAP

Hi Brandon

As we’d discussed in our earlier t-con, I did a test drive of eeDAP in digital mode. I was able to install and run until extract ROIs on a sample WSI (ndip format) downloaded from:  http://openslide.cs.cmu.edu/download/openslide-testdata/Hamamatsu/. However, since I have no clue about the content of the WSI, ended up with an error in ExtractTOI: ‘Bottom slide goes outside of the WSI’. Maybe you could also share some example WSIs, as given in ‘sample_inputfiles’?

I also checked if Matlab can open the Philips WSI formats: iSyntax and BigTiff; and it didn’t work. The tiff format is supported by ObjectiveView. It is also claimed to be understood by OpenSlide but couldn’t verify. So seems like it will take some effort to make Philips formats read by eeDAP.  I will also consult our experts in Image Management System. Shall we set up a technical meeting to address the issue?

Thanks in advance.

Best regards
Prarthana